Hb_003446_030

Information

Type -
Description -
Location Contig3446: 33618-38342
Sequence    

Annotation

kegg
ID rcu:RCOM_0265270
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID KDP27374.1
description hypothetical protein JCGZ_20198 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35957: 34425-34768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003446_030 0.0 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
2 Hb_001032_060 0.0818819408 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
3 Hb_028013_010 0.082448084 - - alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_145535_010 0.0876318807 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
5 Hb_018709_010 0.0897000575 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
6 Hb_000419_080 0.0940909805 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
7 Hb_000445_020 0.0961831701 - - GABA-specific permease, putative [Ricinus communis]
8 Hb_001675_210 0.0973950894 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
9 Hb_000488_040 0.0979401354 - - unnamed protein product [Vitis vinifera]
10 Hb_000828_030 0.0995048792 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
11 Hb_000025_250 0.0997709252 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
12 Hb_004592_020 0.1003062174 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
13 Hb_094462_010 0.1007539943 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
14 Hb_005747_020 0.1010440579 - - bacterial-induced peroxidase [Gossypium schwendimanii]
15 Hb_000022_270 0.1016389342 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003685_060 0.1021517749 - - PREDICTED: laccase-15 [Jatropha curcas]
17 Hb_001604_140 0.1027917977 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
18 Hb_000201_080 0.1040115429 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_126040_020 0.1055206577 - - -
20 Hb_020141_020 0.1059377671 - - -

Gene co-expression network

sample Hb_003446_030 Hb_003446_030 Hb_001032_060 Hb_001032_060 Hb_003446_030--Hb_001032_060 Hb_028013_010 Hb_028013_010 Hb_003446_030--Hb_028013_010 Hb_145535_010 Hb_145535_010 Hb_003446_030--Hb_145535_010 Hb_018709_010 Hb_018709_010 Hb_003446_030--Hb_018709_010 Hb_000419_080 Hb_000419_080 Hb_003446_030--Hb_000419_080 Hb_000445_020 Hb_000445_020 Hb_003446_030--Hb_000445_020 Hb_001032_060--Hb_000419_080 Hb_005747_020 Hb_005747_020 Hb_001032_060--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_001032_060--Hb_094462_010 Hb_001032_060--Hb_018709_010 Hb_000022_270 Hb_000022_270 Hb_001032_060--Hb_000022_270 Hb_000488_040 Hb_000488_040 Hb_001032_060--Hb_000488_040 Hb_028013_010--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_028013_010--Hb_020141_020 Hb_028013_010--Hb_001032_060 Hb_000025_250 Hb_000025_250 Hb_028013_010--Hb_000025_250 Hb_100786_010 Hb_100786_010 Hb_028013_010--Hb_100786_010 Hb_028013_010--Hb_000419_080 Hb_145535_010--Hb_000419_080 Hb_145535_010--Hb_000488_040 Hb_000859_040 Hb_000859_040 Hb_145535_010--Hb_000859_040 Hb_007810_140 Hb_007810_140 Hb_145535_010--Hb_007810_140 Hb_001410_090 Hb_001410_090 Hb_145535_010--Hb_001410_090 Hb_018709_010--Hb_020141_020 Hb_018709_010--Hb_000025_250 Hb_018709_010--Hb_100786_010 Hb_018709_010--Hb_000419_080 Hb_000419_080--Hb_094462_010 Hb_000563_070 Hb_000563_070 Hb_000419_080--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_000419_080--Hb_000264_250 Hb_000419_080--Hb_005747_020 Hb_000419_080--Hb_000022_270 Hb_009780_060 Hb_009780_060 Hb_000445_020--Hb_009780_060 Hb_004592_020 Hb_004592_020 Hb_000445_020--Hb_004592_020 Hb_002900_020 Hb_002900_020 Hb_000445_020--Hb_002900_020 Hb_005433_050 Hb_005433_050 Hb_000445_020--Hb_005433_050 Hb_000445_020--Hb_000488_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00690199 0.343388 0.0209828 0.0144023 0 0.0446191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.01232 0 4.57569 0

CAGE analysis