Hb_145535_010

Information

Type -
Description -
Location Contig145535: 4252-4849
Sequence    

Annotation

kegg
ID rcu:RCOM_0766900
description (R)-limonene synthase, putative (EC:4.2.3.20)
nr
ID XP_012075360.1
description PREDICTED: terpene synthase 10-like [Jatropha curcas]
swissprot
ID Q93X23
description Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1
trembl
ID A0A067KK14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09482 PE=4 SV=1
Gene Ontology
ID GO:0009536
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11819: 4357-4748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145535_010 0.0 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
2 Hb_000419_080 0.0847907536 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
3 Hb_003446_030 0.0876318807 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
4 Hb_000488_040 0.0925023582 - - unnamed protein product [Vitis vinifera]
5 Hb_000859_040 0.092574985 - - Early nodulin 16 precursor, putative [Ricinus communis]
6 Hb_007810_140 0.0941144583 - - Ankyrin repeat-containing protein [Medicago truncatula]
7 Hb_001410_090 0.0946274366 - - transferase, putative [Ricinus communis]
8 Hb_000160_230 0.0946601914 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
9 Hb_018709_010 0.0985381183 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
10 Hb_027402_120 0.0999640889 - - zinc finger protein, putative [Ricinus communis]
11 Hb_001032_060 0.1004256829 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
12 Hb_100786_010 0.1034582937 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
13 Hb_000563_070 0.1036529973 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
14 Hb_000264_250 0.1044713673 - - thioredoxin family protein [Arabidopsis thaliana]
15 Hb_006196_020 0.1060997055 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
16 Hb_002615_050 0.106105406 - - ATP-binding cassette transporter, putative [Ricinus communis]
17 Hb_002551_010 0.1063946701 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_094462_010 0.1064185573 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
19 Hb_028013_010 0.1066104466 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_005747_020 0.1071011687 - - bacterial-induced peroxidase [Gossypium schwendimanii]

Gene co-expression network

sample Hb_145535_010 Hb_145535_010 Hb_000419_080 Hb_000419_080 Hb_145535_010--Hb_000419_080 Hb_003446_030 Hb_003446_030 Hb_145535_010--Hb_003446_030 Hb_000488_040 Hb_000488_040 Hb_145535_010--Hb_000488_040 Hb_000859_040 Hb_000859_040 Hb_145535_010--Hb_000859_040 Hb_007810_140 Hb_007810_140 Hb_145535_010--Hb_007810_140 Hb_001410_090 Hb_001410_090 Hb_145535_010--Hb_001410_090 Hb_094462_010 Hb_094462_010 Hb_000419_080--Hb_094462_010 Hb_001032_060 Hb_001032_060 Hb_000419_080--Hb_001032_060 Hb_000563_070 Hb_000563_070 Hb_000419_080--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_000419_080--Hb_000264_250 Hb_005747_020 Hb_005747_020 Hb_000419_080--Hb_005747_020 Hb_000022_270 Hb_000022_270 Hb_000419_080--Hb_000022_270 Hb_003446_030--Hb_001032_060 Hb_028013_010 Hb_028013_010 Hb_003446_030--Hb_028013_010 Hb_018709_010 Hb_018709_010 Hb_003446_030--Hb_018709_010 Hb_003446_030--Hb_000419_080 Hb_000445_020 Hb_000445_020 Hb_003446_030--Hb_000445_020 Hb_004592_020 Hb_004592_020 Hb_000488_040--Hb_004592_020 Hb_002900_020 Hb_002900_020 Hb_000488_040--Hb_002900_020 Hb_000488_040--Hb_001032_060 Hb_000488_040--Hb_000419_080 Hb_000488_040--Hb_018709_010 Hb_000488_040--Hb_005747_020 Hb_000859_040--Hb_007810_140 Hb_000160_230 Hb_000160_230 Hb_000859_040--Hb_000160_230 Hb_000859_040--Hb_001410_090 Hb_001114_300 Hb_001114_300 Hb_000859_040--Hb_001114_300 Hb_002615_050 Hb_002615_050 Hb_000859_040--Hb_002615_050 Hb_006196_020 Hb_006196_020 Hb_000859_040--Hb_006196_020 Hb_007810_140--Hb_000160_230 Hb_007810_140--Hb_002615_050 Hb_007810_140--Hb_006196_020 Hb_011824_010 Hb_011824_010 Hb_007810_140--Hb_011824_010 Hb_139460_010 Hb_139460_010 Hb_007810_140--Hb_139460_010 Hb_005747_040 Hb_005747_040 Hb_001410_090--Hb_005747_040 Hb_106528_010 Hb_106528_010 Hb_001410_090--Hb_106528_010 Hb_002551_010 Hb_002551_010 Hb_001410_090--Hb_002551_010 Hb_001114_290 Hb_001114_290 Hb_001410_090--Hb_001114_290 Hb_001410_090--Hb_001114_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.948644 0 0.124676 0 0.0936862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.08181 0

CAGE analysis