Hb_000445_020

Information

Type -
Description -
Location Contig445: 26795-29995
Sequence    

Annotation

kegg
ID rcu:RCOM_0562380
description GABA-specific permease, putative
nr
ID XP_002520314.1
description GABA-specific permease, putative [Ricinus communis]
swissprot
ID B9EXZ6
description Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica GN=BAT1 PE=2 SV=1
trembl
ID B9S2U5
description GABA-specific permease, putative OS=Ricinus communis GN=RCOM_0562380 PE=4 SV=1
Gene Ontology
ID GO:0016021
description amino-acid permease bat1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_020 0.0 - - GABA-specific permease, putative [Ricinus communis]
2 Hb_009780_060 0.0787673325 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
3 Hb_004592_020 0.0791271667 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
4 Hb_002900_020 0.0886383207 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
5 Hb_005433_050 0.0951293883 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
6 Hb_000488_040 0.0956959464 - - unnamed protein product [Vitis vinifera]
7 Hb_003446_030 0.0961831701 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
8 Hb_000203_240 0.0977257494 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_012506_080 0.0983163157 - - amino acid transporter, putative [Ricinus communis]
10 Hb_000483_020 0.1018570039 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
11 Hb_000828_030 0.104033735 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_022115_030 0.1066010173 - - PREDICTED: umecyanin-like [Jatropha curcas]
13 Hb_032717_030 0.1074191113 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
14 Hb_028013_010 0.1080687629 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_018709_010 0.110514225 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_001675_210 0.1116799067 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
17 Hb_001032_060 0.11174299 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
18 Hb_020141_020 0.1154747221 - - -
19 Hb_000025_250 0.1159534016 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
20 Hb_001604_140 0.1182319397 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]

Gene co-expression network

sample Hb_000445_020 Hb_000445_020 Hb_009780_060 Hb_009780_060 Hb_000445_020--Hb_009780_060 Hb_004592_020 Hb_004592_020 Hb_000445_020--Hb_004592_020 Hb_002900_020 Hb_002900_020 Hb_000445_020--Hb_002900_020 Hb_005433_050 Hb_005433_050 Hb_000445_020--Hb_005433_050 Hb_000488_040 Hb_000488_040 Hb_000445_020--Hb_000488_040 Hb_003446_030 Hb_003446_030 Hb_000445_020--Hb_003446_030 Hb_009780_060--Hb_002900_020 Hb_009780_060--Hb_004592_020 Hb_009780_060--Hb_005433_050 Hb_000229_080 Hb_000229_080 Hb_009780_060--Hb_000229_080 Hb_000025_250 Hb_000025_250 Hb_009780_060--Hb_000025_250 Hb_004592_020--Hb_000488_040 Hb_004592_020--Hb_002900_020 Hb_001032_060 Hb_001032_060 Hb_004592_020--Hb_001032_060 Hb_000419_080 Hb_000419_080 Hb_004592_020--Hb_000419_080 Hb_000483_020 Hb_000483_020 Hb_004592_020--Hb_000483_020 Hb_018709_010 Hb_018709_010 Hb_004592_020--Hb_018709_010 Hb_002900_020--Hb_000488_040 Hb_002900_020--Hb_000483_020 Hb_004564_010 Hb_004564_010 Hb_002900_020--Hb_004564_010 Hb_002900_020--Hb_001032_060 Hb_000203_240 Hb_000203_240 Hb_005433_050--Hb_000203_240 Hb_106528_020 Hb_106528_020 Hb_005433_050--Hb_106528_020 Hb_010358_010 Hb_010358_010 Hb_005433_050--Hb_010358_010 Hb_000563_060 Hb_000563_060 Hb_005433_050--Hb_000563_060 Hb_002944_020 Hb_002944_020 Hb_005433_050--Hb_002944_020 Hb_005433_050--Hb_000229_080 Hb_000488_040--Hb_001032_060 Hb_000488_040--Hb_000419_080 Hb_000488_040--Hb_018709_010 Hb_005747_020 Hb_005747_020 Hb_000488_040--Hb_005747_020 Hb_003446_030--Hb_001032_060 Hb_028013_010 Hb_028013_010 Hb_003446_030--Hb_028013_010 Hb_145535_010 Hb_145535_010 Hb_003446_030--Hb_145535_010 Hb_003446_030--Hb_018709_010 Hb_003446_030--Hb_000419_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.370303 0.018374 0.0188516 0 0.0316263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.054766 0.0215442 0 6.32 0.0452743

CAGE analysis