Hb_005433_050

Information

Type -
Description -
Location Contig5433: 44040-45971
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12770g
description POPTRDRAFT_803598; hypothetical protein
nr
ID XP_011023151.1
description PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
swissprot
ID Q6NLC8
description Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1
trembl
ID B9HJA1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12770g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47892: 44078-46020
cDNA
(Sanger)
(ID:Location)		 011_A12.ab1: 44078-45920 , 045_M06.ab1: 44078-45879

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005433_050 0.0 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
2 Hb_000203_240 0.044060471 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_106528_020 0.0593211927 - - Cationic peroxidase 2 precursor [Theobroma cacao]
4 Hb_010358_010 0.0605530821 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
5 Hb_000563_060 0.0610087454 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
6 Hb_002944_020 0.0613972076 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
7 Hb_000229_080 0.0623997546 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
8 Hb_004190_030 0.0635640717 - - unnamed protein product [Vitis vinifera]
9 Hb_039363_010 0.0642609008 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
10 Hb_032717_030 0.0657155807 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
11 Hb_004267_050 0.0666746885 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
12 Hb_002835_020 0.0676184475 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
13 Hb_153208_010 0.0685954062 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
14 Hb_000828_030 0.0688027125 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_020141_020 0.0702470954 - - -
16 Hb_000500_190 0.071310381 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
17 Hb_001140_330 0.0720423896 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
18 Hb_012506_080 0.0721592046 - - amino acid transporter, putative [Ricinus communis]
19 Hb_000388_160 0.0731963038 - - xyloglucan endo-1 family protein [Populus trichocarpa]
20 Hb_038238_010 0.0747655439 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]

Gene co-expression network

sample Hb_005433_050 Hb_005433_050 Hb_000203_240 Hb_000203_240 Hb_005433_050--Hb_000203_240 Hb_106528_020 Hb_106528_020 Hb_005433_050--Hb_106528_020 Hb_010358_010 Hb_010358_010 Hb_005433_050--Hb_010358_010 Hb_000563_060 Hb_000563_060 Hb_005433_050--Hb_000563_060 Hb_002944_020 Hb_002944_020 Hb_005433_050--Hb_002944_020 Hb_000229_080 Hb_000229_080 Hb_005433_050--Hb_000229_080 Hb_000203_240--Hb_002944_020 Hb_000203_240--Hb_000229_080 Hb_000203_240--Hb_106528_020 Hb_004190_030 Hb_004190_030 Hb_000203_240--Hb_004190_030 Hb_000203_240--Hb_000563_060 Hb_038238_010 Hb_038238_010 Hb_106528_020--Hb_038238_010 Hb_005726_030 Hb_005726_030 Hb_106528_020--Hb_005726_030 Hb_061590_010 Hb_061590_010 Hb_106528_020--Hb_061590_010 Hb_187247_010 Hb_187247_010 Hb_106528_020--Hb_187247_010 Hb_106528_020--Hb_010358_010 Hb_153208_010 Hb_153208_010 Hb_106528_020--Hb_153208_010 Hb_010358_010--Hb_002944_020 Hb_010358_010--Hb_153208_010 Hb_020141_020 Hb_020141_020 Hb_010358_010--Hb_020141_020 Hb_010358_010--Hb_038238_010 Hb_010358_010--Hb_004190_030 Hb_000563_060--Hb_004190_030 Hb_002835_020 Hb_002835_020 Hb_000563_060--Hb_002835_020 Hb_001140_330 Hb_001140_330 Hb_000563_060--Hb_001140_330 Hb_039363_010 Hb_039363_010 Hb_000563_060--Hb_039363_010 Hb_003119_110 Hb_003119_110 Hb_000563_060--Hb_003119_110 Hb_000563_060--Hb_153208_010 Hb_002944_020--Hb_153208_010 Hb_002944_020--Hb_106528_020 Hb_000692_270 Hb_000692_270 Hb_002944_020--Hb_000692_270 Hb_003188_020 Hb_003188_020 Hb_002944_020--Hb_003188_020 Hb_014034_020 Hb_014034_020 Hb_002944_020--Hb_014034_020 Hb_000500_190 Hb_000500_190 Hb_000229_080--Hb_000500_190 Hb_000229_080--Hb_014034_020 Hb_004254_070 Hb_004254_070 Hb_000229_080--Hb_004254_070 Hb_000229_080--Hb_000563_060 Hb_000229_080--Hb_003188_020 Hb_000446_100 Hb_000446_100 Hb_000229_080--Hb_000446_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.4171 0.132413 0.125381 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0559744 0.0440201 0 52.4 0.268545

CAGE analysis