Hb_000160_230

Information

Type transcription factor
Description TF Family: MYB
Location Contig160: 195444-197218
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02990g
description putative MYB transcription factor family protein
nr
ID XP_012089912.1
description PREDICTED: transcription factor MYB3-like [Jatropha curcas]
swissprot
ID Q38851
description Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1
trembl
ID A0A067JT03
description MYB family protein OS=Jatropha curcas GN=JCGZ_02496 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription repressor myb6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14329: 195563-195910 , PASA_asmbl_14330: 196321-196625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_230 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
2 Hb_007810_140 0.014695522 - - Ankyrin repeat-containing protein [Medicago truncatula]
3 Hb_000859_040 0.0275542582 - - Early nodulin 16 precursor, putative [Ricinus communis]
4 Hb_002615_050 0.0415001613 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_006196_020 0.0520949963 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
6 Hb_011824_010 0.0613778949 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
7 Hb_010712_020 0.0665324294 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
8 Hb_139460_010 0.0677216232 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
9 Hb_039342_030 0.072469811 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001410_090 0.0738096336 - - transferase, putative [Ricinus communis]
11 Hb_016172_010 0.0744302923 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
12 Hb_001114_300 0.0773306186 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
13 Hb_001141_170 0.0773841641 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
14 Hb_004564_010 0.0823327724 - - receptor-kinase, putative [Ricinus communis]
15 Hb_011856_010 0.0831264032 - - cytochrome P450, putative [Ricinus communis]
16 Hb_012019_030 0.0850476171 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
17 Hb_001863_290 0.0873497194 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
18 Hb_004195_040 0.0905206367 - - salicylic acid methyl transferase [Capsicum annuum]
19 Hb_001999_220 0.0914677873 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
20 Hb_000488_040 0.0920184808 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000160_230 Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_000160_230--Hb_007810_140 Hb_000859_040 Hb_000859_040 Hb_000160_230--Hb_000859_040 Hb_002615_050 Hb_002615_050 Hb_000160_230--Hb_002615_050 Hb_006196_020 Hb_006196_020 Hb_000160_230--Hb_006196_020 Hb_011824_010 Hb_011824_010 Hb_000160_230--Hb_011824_010 Hb_010712_020 Hb_010712_020 Hb_000160_230--Hb_010712_020 Hb_007810_140--Hb_000859_040 Hb_007810_140--Hb_002615_050 Hb_007810_140--Hb_006196_020 Hb_007810_140--Hb_011824_010 Hb_139460_010 Hb_139460_010 Hb_007810_140--Hb_139460_010 Hb_001410_090 Hb_001410_090 Hb_000859_040--Hb_001410_090 Hb_001114_300 Hb_001114_300 Hb_000859_040--Hb_001114_300 Hb_000859_040--Hb_002615_050 Hb_000859_040--Hb_006196_020 Hb_002615_050--Hb_006196_020 Hb_002615_050--Hb_011824_010 Hb_002615_050--Hb_139460_010 Hb_042664_010 Hb_042664_010 Hb_006196_020--Hb_042664_010 Hb_039342_030 Hb_039342_030 Hb_006196_020--Hb_039342_030 Hb_011824_010--Hb_010712_020 Hb_011824_010--Hb_139460_010 Hb_001863_290 Hb_001863_290 Hb_011824_010--Hb_001863_290 Hb_107258_010 Hb_107258_010 Hb_011824_010--Hb_107258_010 Hb_011856_010 Hb_011856_010 Hb_011824_010--Hb_011856_010 Hb_010712_020--Hb_001863_290 Hb_001141_170 Hb_001141_170 Hb_010712_020--Hb_001141_170 Hb_010712_020--Hb_007810_140 Hb_064398_010 Hb_064398_010 Hb_010712_020--Hb_064398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.04535 0.286432 0.810961 0 0.014353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 41.2735 0

CAGE analysis