Hb_039342_030

Information

Type -
Description -
Location Contig39342: 30546-32186
Sequence    

Annotation

kegg
ID rcu:RCOM_1014140
description hypothetical protein
nr
ID XP_002522549.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S980
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1014140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039342_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_016172_010 0.0554685206 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
3 Hb_006196_020 0.0563744188 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
4 Hb_008705_070 0.0686895865 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
5 Hb_042664_010 0.0709252439 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
6 Hb_002615_050 0.0722870592 - - ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_000160_230 0.072469811 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_000813_120 0.0761394088 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
9 Hb_007810_140 0.0784407275 - - Ankyrin repeat-containing protein [Medicago truncatula]
10 Hb_000859_040 0.0890635184 - - Early nodulin 16 precursor, putative [Ricinus communis]
11 Hb_008160_020 0.0891644345 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
12 Hb_117464_010 0.0902742613 - - PREDICTED: flavone 3'-O-methyltransferase 1-like [Jatropha curcas]
13 Hb_011824_010 0.0907620477 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
14 Hb_001081_020 0.0919772812 - - Cytochrome P450 76C2 [Triticum urartu]
15 Hb_025526_090 0.0927453226 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
16 Hb_011856_010 0.0959879551 - - cytochrome P450, putative [Ricinus communis]
17 Hb_139460_010 0.0968848623 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
18 Hb_010712_020 0.098534832 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
19 Hb_005511_050 0.0997056917 - - hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
20 Hb_000640_270 0.1007592746 - - PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]

Gene co-expression network

sample Hb_039342_030 Hb_039342_030 Hb_016172_010 Hb_016172_010 Hb_039342_030--Hb_016172_010 Hb_006196_020 Hb_006196_020 Hb_039342_030--Hb_006196_020 Hb_008705_070 Hb_008705_070 Hb_039342_030--Hb_008705_070 Hb_042664_010 Hb_042664_010 Hb_039342_030--Hb_042664_010 Hb_002615_050 Hb_002615_050 Hb_039342_030--Hb_002615_050 Hb_000160_230 Hb_000160_230 Hb_039342_030--Hb_000160_230 Hb_016172_010--Hb_002615_050 Hb_025526_090 Hb_025526_090 Hb_016172_010--Hb_025526_090 Hb_011824_010 Hb_011824_010 Hb_016172_010--Hb_011824_010 Hb_016172_010--Hb_008705_070 Hb_016172_010--Hb_006196_020 Hb_006196_020--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_006196_020--Hb_007810_140 Hb_006196_020--Hb_002615_050 Hb_006196_020--Hb_042664_010 Hb_000859_040 Hb_000859_040 Hb_006196_020--Hb_000859_040 Hb_001328_110 Hb_001328_110 Hb_008705_070--Hb_001328_110 Hb_008705_070--Hb_025526_090 Hb_003052_070 Hb_003052_070 Hb_008705_070--Hb_003052_070 Hb_008705_070--Hb_042664_010 Hb_001901_090 Hb_001901_090 Hb_042664_010--Hb_001901_090 Hb_042664_010--Hb_002615_050 Hb_002534_080 Hb_002534_080 Hb_042664_010--Hb_002534_080 Hb_002615_050--Hb_007810_140 Hb_002615_050--Hb_000160_230 Hb_002615_050--Hb_011824_010 Hb_002615_050--Hb_000859_040 Hb_139460_010 Hb_139460_010 Hb_002615_050--Hb_139460_010 Hb_000160_230--Hb_007810_140 Hb_000160_230--Hb_000859_040 Hb_000160_230--Hb_011824_010 Hb_010712_020 Hb_010712_020 Hb_000160_230--Hb_010712_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.22132 0.0470241 0.0277203 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.49384 0

CAGE analysis