Hb_001328_110

Information

Type -
Description -
Location Contig1328: 160177-160998
Sequence    

Annotation

kegg
ID rcu:RCOM_1119530
description ubiquitin-protein ligase, putative
nr
ID XP_012080646.1
description PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
swissprot
ID Q6R7C4
description Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1 (isolate France) GN=ORF106 PE=3 SV=1
trembl
ID A0A067K3M1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13754 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001328_110 0.0 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
2 Hb_008705_070 0.0386220369 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
3 Hb_003052_070 0.0523060893 - - PREDICTED: peroxidase 11 [Jatropha curcas]
4 Hb_006538_050 0.0569230022 - - hypothetical protein RCOM_1308310 [Ricinus communis]
5 Hb_000120_710 0.0601811029 - - unnamed protein product [Vitis vinifera]
6 Hb_025526_090 0.0663969047 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
7 Hb_000567_310 0.0729142961 - - Miraculin precursor, putative [Ricinus communis]
8 Hb_003855_070 0.0759364745 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
9 Hb_003253_020 0.0776053655 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
10 Hb_001173_050 0.0834272375 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
11 Hb_011856_010 0.0857394717 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000617_340 0.0861281838 - - respiratory burst oxidase B [Manihot esculenta]
13 Hb_001544_040 0.0871803948 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
14 Hb_000003_470 0.0872708995 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003786_060 0.0890333247 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
16 Hb_016172_010 0.0935813403 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
17 Hb_001218_020 0.0977477409 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
18 Hb_027288_010 0.0995334181 - - mutt domain protein, putative [Ricinus communis]
19 Hb_007747_030 0.1008509034 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
20 Hb_002615_050 0.1015913157 - - ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001328_110 Hb_001328_110 Hb_008705_070 Hb_008705_070 Hb_001328_110--Hb_008705_070 Hb_003052_070 Hb_003052_070 Hb_001328_110--Hb_003052_070 Hb_006538_050 Hb_006538_050 Hb_001328_110--Hb_006538_050 Hb_000120_710 Hb_000120_710 Hb_001328_110--Hb_000120_710 Hb_025526_090 Hb_025526_090 Hb_001328_110--Hb_025526_090 Hb_000567_310 Hb_000567_310 Hb_001328_110--Hb_000567_310 Hb_039342_030 Hb_039342_030 Hb_008705_070--Hb_039342_030 Hb_008705_070--Hb_025526_090 Hb_008705_070--Hb_003052_070 Hb_016172_010 Hb_016172_010 Hb_008705_070--Hb_016172_010 Hb_042664_010 Hb_042664_010 Hb_008705_070--Hb_042664_010 Hb_003052_070--Hb_000567_310 Hb_027288_010 Hb_027288_010 Hb_003052_070--Hb_027288_010 Hb_007747_030 Hb_007747_030 Hb_003052_070--Hb_007747_030 Hb_003052_070--Hb_006538_050 Hb_003786_060 Hb_003786_060 Hb_003052_070--Hb_003786_060 Hb_006538_050--Hb_003786_060 Hb_006538_050--Hb_000120_710 Hb_006538_050--Hb_000567_310 Hb_000617_340 Hb_000617_340 Hb_006538_050--Hb_000617_340 Hb_001544_040 Hb_001544_040 Hb_000120_710--Hb_001544_040 Hb_000120_710--Hb_000617_340 Hb_000513_110 Hb_000513_110 Hb_000120_710--Hb_000513_110 Hb_003253_020 Hb_003253_020 Hb_000120_710--Hb_003253_020 Hb_001173_050 Hb_001173_050 Hb_025526_090--Hb_001173_050 Hb_011856_010 Hb_011856_010 Hb_025526_090--Hb_011856_010 Hb_000003_470 Hb_000003_470 Hb_025526_090--Hb_000003_470 Hb_025526_090--Hb_016172_010 Hb_000567_310--Hb_027288_010 Hb_000567_310--Hb_001173_050 Hb_000567_310--Hb_003786_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.364076 0.109972 0.198765 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.74647 0

CAGE analysis