Hb_006538_050

Information

Type -
Description -
Location Contig6538: 20690-21283
Sequence    

Annotation

kegg
ID rcu:RCOM_1308310
description hypothetical protein
nr
ID XP_002526983.1
description hypothetical protein RCOM_1308310 [Ricinus communis]
swissprot
ID Q9CA36
description VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2 SV=1
trembl
ID B9SLW4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1308310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_050 0.0 - - hypothetical protein RCOM_1308310 [Ricinus communis]
2 Hb_003786_060 0.0503514943 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
3 Hb_000120_710 0.054698477 - - unnamed protein product [Vitis vinifera]
4 Hb_001328_110 0.0569230022 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
5 Hb_003052_070 0.0637103504 - - PREDICTED: peroxidase 11 [Jatropha curcas]
6 Hb_000567_310 0.0676806272 - - Miraculin precursor, putative [Ricinus communis]
7 Hb_000617_340 0.0841330772 - - respiratory burst oxidase B [Manihot esculenta]
8 Hb_000948_070 0.0894543946 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
9 Hb_003253_020 0.0930646185 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
10 Hb_008705_070 0.0931632159 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
11 Hb_001544_040 0.0938833607 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
12 Hb_001218_020 0.0977858393 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
13 Hb_003855_070 0.0981115518 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
14 Hb_000933_200 0.0995062476 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
15 Hb_006538_070 0.0995315147 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
16 Hb_007747_030 0.1001735947 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
17 Hb_098795_010 0.1013611808 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
18 Hb_025526_090 0.1055376754 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
19 Hb_002232_400 0.1081625568 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
20 Hb_000513_110 0.1083401453 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]

Gene co-expression network

sample Hb_006538_050 Hb_006538_050 Hb_003786_060 Hb_003786_060 Hb_006538_050--Hb_003786_060 Hb_000120_710 Hb_000120_710 Hb_006538_050--Hb_000120_710 Hb_001328_110 Hb_001328_110 Hb_006538_050--Hb_001328_110 Hb_003052_070 Hb_003052_070 Hb_006538_050--Hb_003052_070 Hb_000567_310 Hb_000567_310 Hb_006538_050--Hb_000567_310 Hb_000617_340 Hb_000617_340 Hb_006538_050--Hb_000617_340 Hb_003786_060--Hb_003052_070 Hb_007747_030 Hb_007747_030 Hb_003786_060--Hb_007747_030 Hb_003786_060--Hb_000567_310 Hb_003786_060--Hb_001328_110 Hb_000933_200 Hb_000933_200 Hb_003786_060--Hb_000933_200 Hb_000120_710--Hb_001328_110 Hb_001544_040 Hb_001544_040 Hb_000120_710--Hb_001544_040 Hb_000120_710--Hb_000617_340 Hb_000513_110 Hb_000513_110 Hb_000120_710--Hb_000513_110 Hb_003253_020 Hb_003253_020 Hb_000120_710--Hb_003253_020 Hb_008705_070 Hb_008705_070 Hb_001328_110--Hb_008705_070 Hb_001328_110--Hb_003052_070 Hb_025526_090 Hb_025526_090 Hb_001328_110--Hb_025526_090 Hb_001328_110--Hb_000567_310 Hb_003052_070--Hb_000567_310 Hb_027288_010 Hb_027288_010 Hb_003052_070--Hb_027288_010 Hb_003052_070--Hb_007747_030 Hb_000567_310--Hb_027288_010 Hb_001173_050 Hb_001173_050 Hb_000567_310--Hb_001173_050 Hb_000617_340--Hb_003253_020 Hb_000617_340--Hb_001544_040 Hb_000617_340--Hb_000513_110 Hb_000617_340--Hb_000933_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0903684 0.0336116 0.0864697 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.727216 0

CAGE analysis