Hb_003253_020

Information

Type transcription factor
Description TF Family: B3
Location Contig3253: 17234-18771
Sequence    

Annotation

kegg
ID rcu:RCOM_1258760
description transcription factor, putative
nr
ID XP_002530522.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FNI3
description B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana GN=At5g06250 PE=2 SV=1
trembl
ID B9SX03
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1258760 PE=4 SV=1
Gene Ontology
ID GO:0006355
description b3 domain-containing protein at2g36080-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34271: 16538-18051 , PASA_asmbl_34272: 17316-17632 , PASA_asmbl_34273: 18156-18367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003253_020 0.0 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
2 Hb_000933_200 0.0482445332 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
3 Hb_001901_090 0.0574145152 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_000617_340 0.0638761617 - - respiratory burst oxidase B [Manihot esculenta]
5 Hb_001544_040 0.0696860321 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
6 Hb_000513_110 0.0731789451 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
7 Hb_000120_710 0.0737371839 - - unnamed protein product [Vitis vinifera]
8 Hb_001328_110 0.0776053655 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
9 Hb_000503_040 0.0782903179 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
10 Hb_008705_070 0.078383938 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
11 Hb_010407_120 0.0920876783 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
12 Hb_006538_050 0.0930646185 - - hypothetical protein RCOM_1308310 [Ricinus communis]
13 Hb_042664_010 0.0938657844 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
14 Hb_007527_020 0.1081223659 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
15 Hb_003052_070 0.108793604 - - PREDICTED: peroxidase 11 [Jatropha curcas]
16 Hb_003786_060 0.1091415539 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
17 Hb_003855_070 0.1122705774 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
18 Hb_002965_020 0.1142297534 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
19 Hb_005356_010 0.1202641154 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
20 Hb_000038_090 0.1226733492 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]

Gene co-expression network

sample Hb_003253_020 Hb_003253_020 Hb_000933_200 Hb_000933_200 Hb_003253_020--Hb_000933_200 Hb_001901_090 Hb_001901_090 Hb_003253_020--Hb_001901_090 Hb_000617_340 Hb_000617_340 Hb_003253_020--Hb_000617_340 Hb_001544_040 Hb_001544_040 Hb_003253_020--Hb_001544_040 Hb_000513_110 Hb_000513_110 Hb_003253_020--Hb_000513_110 Hb_000120_710 Hb_000120_710 Hb_003253_020--Hb_000120_710 Hb_000933_200--Hb_000617_340 Hb_010407_120 Hb_010407_120 Hb_000933_200--Hb_010407_120 Hb_000933_200--Hb_000513_110 Hb_000933_200--Hb_001544_040 Hb_003786_060 Hb_003786_060 Hb_000933_200--Hb_003786_060 Hb_000503_040 Hb_000503_040 Hb_001901_090--Hb_000503_040 Hb_042664_010 Hb_042664_010 Hb_001901_090--Hb_042664_010 Hb_001901_090--Hb_000513_110 Hb_005464_040 Hb_005464_040 Hb_001901_090--Hb_005464_040 Hb_003891_060 Hb_003891_060 Hb_001901_090--Hb_003891_060 Hb_000617_340--Hb_000120_710 Hb_000617_340--Hb_001544_040 Hb_000617_340--Hb_000513_110 Hb_006538_050 Hb_006538_050 Hb_000617_340--Hb_006538_050 Hb_001544_040--Hb_000120_710 Hb_001544_040--Hb_010407_120 Hb_001544_040--Hb_000513_110 Hb_005356_010 Hb_005356_010 Hb_001544_040--Hb_005356_010 Hb_000513_110--Hb_000120_710 Hb_007527_020 Hb_007527_020 Hb_000513_110--Hb_007527_020 Hb_000120_710--Hb_006538_050 Hb_001328_110 Hb_001328_110 Hb_000120_710--Hb_001328_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.13258 0.0992221 0.114655 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.86923 0

CAGE analysis