Hb_003891_060

Information

Type -
Description -
Location Contig3891: 43007-48488
Sequence    

Annotation

kegg
ID gmx:100787202
description linoleate 13S-lipoxygenase 2-1, chloroplastic-like
nr
ID XP_003537949.1
description PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
swissprot
ID P48999
description Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alox5 PE=1 SV=3
trembl
ID K7LPI4
description Lipoxygenase OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0009535
description linoleate 13s-lipoxygenase 2- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38982: 43118-44243 , PASA_asmbl_38983: 44454-45611 , PASA_asmbl_38984: 45614-47065 , PASA_asmbl_38985: 48080-48427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003891_060 0.0 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
2 Hb_000155_140 0.072884031 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_000352_080 0.0774565438 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
4 Hb_000446_100 0.079367738 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
5 Hb_004254_070 0.0812144613 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
6 Hb_001901_090 0.0834162504 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_001456_040 0.0849076804 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
8 Hb_000503_040 0.0858176956 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
9 Hb_002818_080 0.0874244181 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
10 Hb_020480_050 0.0886239474 - - putative wall-associated kinase family protein [Populus trichocarpa]
11 Hb_042664_010 0.0892446502 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
12 Hb_000025_250 0.0903420436 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
13 Hb_002534_080 0.0909047917 - - zinc finger protein, putative [Ricinus communis]
14 Hb_001301_020 0.0910626223 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
15 Hb_005464_040 0.0910934707 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_001699_240 0.0926824655 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
17 Hb_014034_020 0.0936033802 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
18 Hb_010697_030 0.0949642317 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
19 Hb_000500_190 0.096136524 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
20 Hb_007483_040 0.0961466199 - - PREDICTED: protein SRG1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003891_060 Hb_003891_060 Hb_000155_140 Hb_000155_140 Hb_003891_060--Hb_000155_140 Hb_000352_080 Hb_000352_080 Hb_003891_060--Hb_000352_080 Hb_000446_100 Hb_000446_100 Hb_003891_060--Hb_000446_100 Hb_004254_070 Hb_004254_070 Hb_003891_060--Hb_004254_070 Hb_001901_090 Hb_001901_090 Hb_003891_060--Hb_001901_090 Hb_001456_040 Hb_001456_040 Hb_003891_060--Hb_001456_040 Hb_000229_080 Hb_000229_080 Hb_000155_140--Hb_000229_080 Hb_000155_140--Hb_000352_080 Hb_001134_040 Hb_001134_040 Hb_000155_140--Hb_001134_040 Hb_058620_010 Hb_058620_010 Hb_000155_140--Hb_058620_010 Hb_009780_060 Hb_009780_060 Hb_000155_140--Hb_009780_060 Hb_000352_080--Hb_001134_040 Hb_000352_080--Hb_058620_010 Hb_002805_230 Hb_002805_230 Hb_000352_080--Hb_002805_230 Hb_007417_020 Hb_007417_020 Hb_000352_080--Hb_007417_020 Hb_000446_100--Hb_004254_070 Hb_001301_020 Hb_001301_020 Hb_000446_100--Hb_001301_020 Hb_003188_020 Hb_003188_020 Hb_000446_100--Hb_003188_020 Hb_000500_190 Hb_000500_190 Hb_000446_100--Hb_000500_190 Hb_014034_020 Hb_014034_020 Hb_000446_100--Hb_014034_020 Hb_000446_100--Hb_001456_040 Hb_004254_070--Hb_014034_020 Hb_004254_070--Hb_003188_020 Hb_004254_070--Hb_000500_190 Hb_004254_070--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_004254_070--Hb_000025_250 Hb_000503_040 Hb_000503_040 Hb_001901_090--Hb_000503_040 Hb_003253_020 Hb_003253_020 Hb_001901_090--Hb_003253_020 Hb_042664_010 Hb_042664_010 Hb_001901_090--Hb_042664_010 Hb_000513_110 Hb_000513_110 Hb_001901_090--Hb_000513_110 Hb_005464_040 Hb_005464_040 Hb_001901_090--Hb_005464_040 Hb_020480_050 Hb_020480_050 Hb_001456_040--Hb_020480_050 Hb_009568_010 Hb_009568_010 Hb_001456_040--Hb_009568_010 Hb_001456_040--Hb_000500_190 Hb_000141_070 Hb_000141_070 Hb_001456_040--Hb_000141_070 Hb_001456_040--Hb_004254_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.581177 0.383142 0.203623 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0301968 0.0712871 0 12.9761 0

CAGE analysis