Hb_000352_080

Information

Type -
Description -
Location Contig352: 85981-86644
Sequence    

Annotation

kegg
ID rcu:RCOM_1444000
description lipid binding protein, putative
nr
ID XP_012067393.1
description PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
swissprot
ID Q9FFY3
description Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1
trembl
ID A0A067L0D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26900 PE=4 SV=1
Gene Ontology
ID GO:0008289
description lipid transfer-like protein vas

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36549: 79459-85166 , PASA_asmbl_36550: 84722-85485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_080 0.0 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
2 Hb_001134_040 0.0733974085 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
3 Hb_003891_060 0.0774565438 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
4 Hb_000155_140 0.0786132304 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_058620_010 0.0838334334 - - cytochrome P450, putative [Ricinus communis]
6 Hb_002805_230 0.0877182401 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
7 Hb_007417_020 0.0972076357 - - Reticuline oxidase precursor, putative [Ricinus communis]
8 Hb_010697_030 0.0972873712 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
9 Hb_001699_240 0.0974412871 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
10 Hb_003090_070 0.1005977874 - - PREDICTED: laccase-7 [Jatropha curcas]
11 Hb_000712_070 0.1010461537 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001464_010 0.1011947315 - - PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Populus euphratica]
13 Hb_000503_040 0.1043301296 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
14 Hb_001901_090 0.1067738715 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_007527_020 0.1077016037 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
16 Hb_007483_040 0.1078841654 - - PREDICTED: protein SRG1-like [Jatropha curcas]
17 Hb_002818_080 0.1115531127 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
18 Hb_135392_010 0.1168783771 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
19 Hb_009780_060 0.1185437127 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
20 Hb_020480_050 0.1186937491 - - putative wall-associated kinase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000352_080 Hb_000352_080 Hb_001134_040 Hb_001134_040 Hb_000352_080--Hb_001134_040 Hb_003891_060 Hb_003891_060 Hb_000352_080--Hb_003891_060 Hb_000155_140 Hb_000155_140 Hb_000352_080--Hb_000155_140 Hb_058620_010 Hb_058620_010 Hb_000352_080--Hb_058620_010 Hb_002805_230 Hb_002805_230 Hb_000352_080--Hb_002805_230 Hb_007417_020 Hb_007417_020 Hb_000352_080--Hb_007417_020 Hb_001134_040--Hb_002805_230 Hb_001134_040--Hb_058620_010 Hb_003090_070 Hb_003090_070 Hb_001134_040--Hb_003090_070 Hb_000712_070 Hb_000712_070 Hb_001134_040--Hb_000712_070 Hb_001134_040--Hb_007417_020 Hb_135392_010 Hb_135392_010 Hb_001134_040--Hb_135392_010 Hb_003891_060--Hb_000155_140 Hb_000446_100 Hb_000446_100 Hb_003891_060--Hb_000446_100 Hb_004254_070 Hb_004254_070 Hb_003891_060--Hb_004254_070 Hb_001901_090 Hb_001901_090 Hb_003891_060--Hb_001901_090 Hb_001456_040 Hb_001456_040 Hb_003891_060--Hb_001456_040 Hb_000229_080 Hb_000229_080 Hb_000155_140--Hb_000229_080 Hb_000155_140--Hb_001134_040 Hb_000155_140--Hb_058620_010 Hb_009780_060 Hb_009780_060 Hb_000155_140--Hb_009780_060 Hb_058620_010--Hb_000712_070 Hb_058620_010--Hb_002805_230 Hb_004097_080 Hb_004097_080 Hb_058620_010--Hb_004097_080 Hb_058620_010--Hb_135392_010 Hb_058620_010--Hb_003090_070 Hb_002805_230--Hb_003090_070 Hb_002805_230--Hb_000712_070 Hb_007532_050 Hb_007532_050 Hb_002805_230--Hb_007532_050 Hb_004693_010 Hb_004693_010 Hb_002805_230--Hb_004693_010 Hb_001464_010 Hb_001464_010 Hb_007417_020--Hb_001464_010 Hb_007417_020--Hb_135392_010 Hb_007491_010 Hb_007491_010 Hb_007417_020--Hb_007491_010 Hb_007417_020--Hb_003090_070 Hb_007417_020--Hb_002805_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.781888 0.862607 0.401522 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109972 0.0864181 0 18.5662 0.165651

CAGE analysis