Hb_000513_110

Information

Type -
Description -
Location Contig513: 125370-126220
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14240g
description POPTRDRAFT_1086370; germin-like protein 1
nr
ID XP_011045439.1
description PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
swissprot
ID P92997
description Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=2
trembl
ID B9HR06
description Germin-like protein 1 OS=Populus trichocarpa GN=POPTR_0009s14240g PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46392: 125091-126220 , PASA_asmbl_46393: 106814-126179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000513_110 0.0 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
2 Hb_000120_710 0.0695475593 - - unnamed protein product [Vitis vinifera]
3 Hb_003253_020 0.0731789451 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
4 Hb_000617_340 0.0753245681 - - respiratory burst oxidase B [Manihot esculenta]
5 Hb_001544_040 0.0786543907 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
6 Hb_007527_020 0.079816307 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
7 Hb_001901_090 0.080465159 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_000120_440 0.0853499646 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000503_040 0.0870108502 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
10 Hb_000005_270 0.0873491497 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
11 Hb_000933_200 0.0890313417 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
12 Hb_000021_090 0.0931261025 - - -
13 Hb_005356_010 0.0967807184 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
14 Hb_010407_120 0.1011168217 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
15 Hb_001699_240 0.105309977 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
16 Hb_006538_050 0.1083401453 - - hypothetical protein RCOM_1308310 [Ricinus communis]
17 Hb_007532_050 0.1092600805 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
18 Hb_001328_110 0.1112024743 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
19 Hb_002805_230 0.1133379857 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
20 Hb_002534_080 0.1136816251 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000513_110 Hb_000513_110 Hb_000120_710 Hb_000120_710 Hb_000513_110--Hb_000120_710 Hb_003253_020 Hb_003253_020 Hb_000513_110--Hb_003253_020 Hb_000617_340 Hb_000617_340 Hb_000513_110--Hb_000617_340 Hb_001544_040 Hb_001544_040 Hb_000513_110--Hb_001544_040 Hb_007527_020 Hb_007527_020 Hb_000513_110--Hb_007527_020 Hb_001901_090 Hb_001901_090 Hb_000513_110--Hb_001901_090 Hb_006538_050 Hb_006538_050 Hb_000120_710--Hb_006538_050 Hb_001328_110 Hb_001328_110 Hb_000120_710--Hb_001328_110 Hb_000120_710--Hb_001544_040 Hb_000120_710--Hb_000617_340 Hb_000120_710--Hb_003253_020 Hb_000933_200 Hb_000933_200 Hb_003253_020--Hb_000933_200 Hb_003253_020--Hb_001901_090 Hb_003253_020--Hb_000617_340 Hb_003253_020--Hb_001544_040 Hb_000617_340--Hb_001544_040 Hb_000617_340--Hb_000933_200 Hb_000617_340--Hb_006538_050 Hb_010407_120 Hb_010407_120 Hb_001544_040--Hb_010407_120 Hb_005356_010 Hb_005356_010 Hb_001544_040--Hb_005356_010 Hb_007527_020--Hb_005356_010 Hb_002805_230 Hb_002805_230 Hb_007527_020--Hb_002805_230 Hb_000281_200 Hb_000281_200 Hb_007527_020--Hb_000281_200 Hb_007532_050 Hb_007532_050 Hb_007527_020--Hb_007532_050 Hb_007527_020--Hb_001544_040 Hb_000503_040 Hb_000503_040 Hb_001901_090--Hb_000503_040 Hb_042664_010 Hb_042664_010 Hb_001901_090--Hb_042664_010 Hb_005464_040 Hb_005464_040 Hb_001901_090--Hb_005464_040 Hb_003891_060 Hb_003891_060 Hb_001901_090--Hb_003891_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.04687 4.00168 11.3221 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.367281 0.0577533 0 137.185 0

CAGE analysis