Hb_000120_710

Information

Type -
Description -
Location Contig120: 558048-558278
Sequence    

Annotation

kegg
ID pop:POPTR_0004s15470g
description hypothetical protein
nr
ID CBI29742.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q7Z449
description Cytochrome P450 2U1 OS=Homo sapiens GN=CYP2U1 PE=1 SV=1
trembl
ID D7TGX0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00570 PE=3 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 cyp82d47-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06186: 556865-558472 , PASA_asmbl_06187: 557132-557852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_710 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_006538_050 0.054698477 - - hypothetical protein RCOM_1308310 [Ricinus communis]
3 Hb_001328_110 0.0601811029 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
4 Hb_001544_040 0.067670411 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
5 Hb_000617_340 0.0684271611 - - respiratory burst oxidase B [Manihot esculenta]
6 Hb_000513_110 0.0695475593 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
7 Hb_003253_020 0.0737371839 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
8 Hb_003855_070 0.0756574019 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
9 Hb_001218_020 0.0784221477 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
10 Hb_008705_070 0.0883802138 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
11 Hb_000005_270 0.0897743074 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
12 Hb_000933_200 0.0973686613 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
13 Hb_001901_090 0.0986115725 - - metal ion binding protein, putative [Ricinus communis]
14 Hb_003786_060 0.099287248 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
15 Hb_003052_070 0.10027177 - - PREDICTED: peroxidase 11 [Jatropha curcas]
16 Hb_000301_030 0.1012907686 - - PREDICTED: pectate lyase-like [Jatropha curcas]
17 Hb_005356_010 0.1043839628 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
18 Hb_025526_090 0.1067974726 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
19 Hb_000120_440 0.10745281 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000567_310 0.1084336099 - - Miraculin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000120_710 Hb_000120_710 Hb_006538_050 Hb_006538_050 Hb_000120_710--Hb_006538_050 Hb_001328_110 Hb_001328_110 Hb_000120_710--Hb_001328_110 Hb_001544_040 Hb_001544_040 Hb_000120_710--Hb_001544_040 Hb_000617_340 Hb_000617_340 Hb_000120_710--Hb_000617_340 Hb_000513_110 Hb_000513_110 Hb_000120_710--Hb_000513_110 Hb_003253_020 Hb_003253_020 Hb_000120_710--Hb_003253_020 Hb_003786_060 Hb_003786_060 Hb_006538_050--Hb_003786_060 Hb_006538_050--Hb_001328_110 Hb_003052_070 Hb_003052_070 Hb_006538_050--Hb_003052_070 Hb_000567_310 Hb_000567_310 Hb_006538_050--Hb_000567_310 Hb_006538_050--Hb_000617_340 Hb_008705_070 Hb_008705_070 Hb_001328_110--Hb_008705_070 Hb_001328_110--Hb_003052_070 Hb_025526_090 Hb_025526_090 Hb_001328_110--Hb_025526_090 Hb_001328_110--Hb_000567_310 Hb_010407_120 Hb_010407_120 Hb_001544_040--Hb_010407_120 Hb_001544_040--Hb_003253_020 Hb_001544_040--Hb_000617_340 Hb_001544_040--Hb_000513_110 Hb_005356_010 Hb_005356_010 Hb_001544_040--Hb_005356_010 Hb_000617_340--Hb_003253_020 Hb_000617_340--Hb_000513_110 Hb_000933_200 Hb_000933_200 Hb_000617_340--Hb_000933_200 Hb_000513_110--Hb_003253_020 Hb_007527_020 Hb_007527_020 Hb_000513_110--Hb_007527_020 Hb_001901_090 Hb_001901_090 Hb_000513_110--Hb_001901_090 Hb_003253_020--Hb_000933_200 Hb_003253_020--Hb_001901_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.73353 2.5679 8.9468 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 94.7733 0

CAGE analysis