Hb_000617_340

Information

Type -
Description -
Location Contig617: 245301-250059
Sequence    

Annotation

kegg
ID rcu:RCOM_1433130
description respiratory burst oxidase, putative (EC:1.6.3.1)
nr
ID ADR70881.1
description respiratory burst oxidase B [Manihot esculenta]
swissprot
ID Q948T9
description Respiratory burst oxidase homolog protein B OS=Solanum tuberosum GN=RBOHB PE=1 SV=1
trembl
ID V9HYU3
description Respiratory burst oxidase B OS=Manihot esculenta GN=RbohB PE=2 SV=1
Gene Ontology
ID GO:0016021
description respiratory burst oxidase homolog protein b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_340 0.0 - - respiratory burst oxidase B [Manihot esculenta]
2 Hb_003253_020 0.0638761617 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
3 Hb_000120_710 0.0684271611 - - unnamed protein product [Vitis vinifera]
4 Hb_001544_040 0.0708249756 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
5 Hb_000513_110 0.0753245681 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
6 Hb_000933_200 0.0765451424 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
7 Hb_006538_050 0.0841330772 - - hypothetical protein RCOM_1308310 [Ricinus communis]
8 Hb_001328_110 0.0861281838 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
9 Hb_001901_090 0.0946462128 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_008705_070 0.1006471574 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
11 Hb_003855_070 0.1020412519 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
12 Hb_003786_060 0.1051449031 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
13 Hb_010407_120 0.1054109025 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
14 Hb_007527_020 0.1059717794 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
15 Hb_000503_040 0.1117789939 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
16 Hb_005356_010 0.1121567269 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
17 Hb_000003_470 0.1133086595 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003052_070 0.1136003152 - - PREDICTED: peroxidase 11 [Jatropha curcas]
19 Hb_098795_010 0.1138088526 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
20 Hb_000005_270 0.1153084738 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000617_340 Hb_000617_340 Hb_003253_020 Hb_003253_020 Hb_000617_340--Hb_003253_020 Hb_000120_710 Hb_000120_710 Hb_000617_340--Hb_000120_710 Hb_001544_040 Hb_001544_040 Hb_000617_340--Hb_001544_040 Hb_000513_110 Hb_000513_110 Hb_000617_340--Hb_000513_110 Hb_000933_200 Hb_000933_200 Hb_000617_340--Hb_000933_200 Hb_006538_050 Hb_006538_050 Hb_000617_340--Hb_006538_050 Hb_003253_020--Hb_000933_200 Hb_001901_090 Hb_001901_090 Hb_003253_020--Hb_001901_090 Hb_003253_020--Hb_001544_040 Hb_003253_020--Hb_000513_110 Hb_003253_020--Hb_000120_710 Hb_000120_710--Hb_006538_050 Hb_001328_110 Hb_001328_110 Hb_000120_710--Hb_001328_110 Hb_000120_710--Hb_001544_040 Hb_000120_710--Hb_000513_110 Hb_010407_120 Hb_010407_120 Hb_001544_040--Hb_010407_120 Hb_001544_040--Hb_000513_110 Hb_005356_010 Hb_005356_010 Hb_001544_040--Hb_005356_010 Hb_007527_020 Hb_007527_020 Hb_000513_110--Hb_007527_020 Hb_000513_110--Hb_001901_090 Hb_000933_200--Hb_010407_120 Hb_000933_200--Hb_000513_110 Hb_000933_200--Hb_001544_040 Hb_003786_060 Hb_003786_060 Hb_000933_200--Hb_003786_060 Hb_006538_050--Hb_003786_060 Hb_006538_050--Hb_001328_110 Hb_003052_070 Hb_003052_070 Hb_006538_050--Hb_003052_070 Hb_000567_310 Hb_000567_310 Hb_006538_050--Hb_000567_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0395194 1.31171 0.765055 1.44054 0.00659259 0.0345234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0352642 0 17.1878 0

CAGE analysis