Hb_001544_040

Information

Type -
Description -
Location Contig1544: 59242-60997
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12770g
description POPTRDRAFT_803598; hypothetical protein
nr
ID XP_011023151.1
description PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
swissprot
ID Q6NLC8
description Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1
trembl
ID B9HJA1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12770g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13340: 60442-60966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001544_040 0.0 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
2 Hb_000120_710 0.067670411 - - unnamed protein product [Vitis vinifera]
3 Hb_010407_120 0.0696849848 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
4 Hb_003253_020 0.0696860321 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
5 Hb_000617_340 0.0708249756 - - respiratory burst oxidase B [Manihot esculenta]
6 Hb_000513_110 0.0786543907 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
7 Hb_005356_010 0.0808766285 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
8 Hb_003855_070 0.0812692771 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
9 Hb_007527_020 0.084874529 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
10 Hb_001328_110 0.0871803948 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
11 Hb_001901_090 0.0872488742 - - metal ion binding protein, putative [Ricinus communis]
12 Hb_000933_200 0.0921761274 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
13 Hb_006538_050 0.0938833607 - - hypothetical protein RCOM_1308310 [Ricinus communis]
14 Hb_002965_020 0.0940079491 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
15 Hb_000301_030 0.0948682365 - - PREDICTED: pectate lyase-like [Jatropha curcas]
16 Hb_008705_070 0.0986902885 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
17 Hb_002232_370 0.103716532 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
18 Hb_000503_040 0.106716167 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
19 Hb_000648_120 0.1070481422 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
20 Hb_007532_050 0.1073653102 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001544_040 Hb_001544_040 Hb_000120_710 Hb_000120_710 Hb_001544_040--Hb_000120_710 Hb_010407_120 Hb_010407_120 Hb_001544_040--Hb_010407_120 Hb_003253_020 Hb_003253_020 Hb_001544_040--Hb_003253_020 Hb_000617_340 Hb_000617_340 Hb_001544_040--Hb_000617_340 Hb_000513_110 Hb_000513_110 Hb_001544_040--Hb_000513_110 Hb_005356_010 Hb_005356_010 Hb_001544_040--Hb_005356_010 Hb_006538_050 Hb_006538_050 Hb_000120_710--Hb_006538_050 Hb_001328_110 Hb_001328_110 Hb_000120_710--Hb_001328_110 Hb_000120_710--Hb_000617_340 Hb_000120_710--Hb_000513_110 Hb_000120_710--Hb_003253_020 Hb_007532_050 Hb_007532_050 Hb_010407_120--Hb_007532_050 Hb_000933_200 Hb_000933_200 Hb_010407_120--Hb_000933_200 Hb_007527_020 Hb_007527_020 Hb_010407_120--Hb_007527_020 Hb_010407_120--Hb_003253_020 Hb_000438_190 Hb_000438_190 Hb_010407_120--Hb_000438_190 Hb_003253_020--Hb_000933_200 Hb_001901_090 Hb_001901_090 Hb_003253_020--Hb_001901_090 Hb_003253_020--Hb_000617_340 Hb_003253_020--Hb_000513_110 Hb_000617_340--Hb_000513_110 Hb_000617_340--Hb_000933_200 Hb_000617_340--Hb_006538_050 Hb_000513_110--Hb_007527_020 Hb_000513_110--Hb_001901_090 Hb_005356_010--Hb_007527_020 Hb_000281_200 Hb_000281_200 Hb_005356_010--Hb_000281_200 Hb_000301_030 Hb_000301_030 Hb_005356_010--Hb_000301_030 Hb_178389_020 Hb_178389_020 Hb_005356_010--Hb_178389_020 Hb_001288_010 Hb_001288_010 Hb_005356_010--Hb_001288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.34772 0.621873 1.33905 0 0.026962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 17.8149 0.110411

CAGE analysis