Hb_000567_310

Information

Type -
Description -
Location Contig567: 357273-357993
Sequence    

Annotation

kegg
ID rcu:RCOM_0538700
description Miraculin precursor, putative
nr
ID XP_002525873.1
description Miraculin precursor, putative [Ricinus communis]
swissprot
ID P13087
description Miraculin OS=Synsepalum dulcificum PE=1 SV=3
trembl
ID B9SIQ4
description Miraculin, putative OS=Ricinus communis GN=RCOM_0538700 PE=4 SV=1
Gene Ontology
ID GO:0004866
description alpha-amylase subtilisin inhibitor-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 010_B13.ab1: 357253-357938

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_310 0.0 - - Miraculin precursor, putative [Ricinus communis]
2 Hb_003052_070 0.0436255745 - - PREDICTED: peroxidase 11 [Jatropha curcas]
3 Hb_006538_050 0.0676806272 - - hypothetical protein RCOM_1308310 [Ricinus communis]
4 Hb_001328_110 0.0729142961 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
5 Hb_027288_010 0.0732051646 - - mutt domain protein, putative [Ricinus communis]
6 Hb_001173_050 0.0745689368 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
7 Hb_003786_060 0.0793259523 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
8 Hb_025526_090 0.0864847174 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
9 Hb_000948_070 0.0874153642 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
10 Hb_007747_030 0.0923132808 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
11 Hb_000441_170 0.0980580577 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
12 Hb_008705_070 0.09968809 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
13 Hb_000758_030 0.0999396115 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
14 Hb_007483_030 0.101739817 - - -
15 Hb_006006_070 0.1018473852 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_002272_160 0.1022323901 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_011856_010 0.1030946827 - - cytochrome P450, putative [Ricinus communis]
18 Hb_002110_270 0.1065235399 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
19 Hb_000120_710 0.1084336099 - - unnamed protein product [Vitis vinifera]
20 Hb_003166_040 0.1098109645 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_000567_310 Hb_000567_310 Hb_003052_070 Hb_003052_070 Hb_000567_310--Hb_003052_070 Hb_006538_050 Hb_006538_050 Hb_000567_310--Hb_006538_050 Hb_001328_110 Hb_001328_110 Hb_000567_310--Hb_001328_110 Hb_027288_010 Hb_027288_010 Hb_000567_310--Hb_027288_010 Hb_001173_050 Hb_001173_050 Hb_000567_310--Hb_001173_050 Hb_003786_060 Hb_003786_060 Hb_000567_310--Hb_003786_060 Hb_003052_070--Hb_001328_110 Hb_003052_070--Hb_027288_010 Hb_007747_030 Hb_007747_030 Hb_003052_070--Hb_007747_030 Hb_003052_070--Hb_006538_050 Hb_003052_070--Hb_003786_060 Hb_006538_050--Hb_003786_060 Hb_000120_710 Hb_000120_710 Hb_006538_050--Hb_000120_710 Hb_006538_050--Hb_001328_110 Hb_000617_340 Hb_000617_340 Hb_006538_050--Hb_000617_340 Hb_008705_070 Hb_008705_070 Hb_001328_110--Hb_008705_070 Hb_001328_110--Hb_000120_710 Hb_025526_090 Hb_025526_090 Hb_001328_110--Hb_025526_090 Hb_007483_030 Hb_007483_030 Hb_027288_010--Hb_007483_030 Hb_027288_010--Hb_007747_030 Hb_003166_040 Hb_003166_040 Hb_027288_010--Hb_003166_040 Hb_002272_160 Hb_002272_160 Hb_027288_010--Hb_002272_160 Hb_011856_010 Hb_011856_010 Hb_001173_050--Hb_011856_010 Hb_001173_050--Hb_025526_090 Hb_139460_010 Hb_139460_010 Hb_001173_050--Hb_139460_010 Hb_004185_040 Hb_004185_040 Hb_001173_050--Hb_004185_040 Hb_001173_050--Hb_001328_110 Hb_003786_060--Hb_007747_030 Hb_003786_060--Hb_001328_110 Hb_000933_200 Hb_000933_200 Hb_003786_060--Hb_000933_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.20929 0.544957 1.23928 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.936 0

CAGE analysis