Hb_025526_090

Information

Type -
Description -
Location Contig25526: 124236-128827
Sequence    

Annotation

kegg
ID pop:POPTR_0011s12930g
description hypothetical protein
nr
ID XP_012070688.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
swissprot
ID Q39086
description Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana GN=SD17 PE=1 SV=1
trembl
ID A0A067KVF4
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_00735 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025526_090 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
2 Hb_001173_050 0.0536254553 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
3 Hb_011856_010 0.0555726336 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000003_470 0.0588060342 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001328_110 0.0663969047 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
6 Hb_016172_010 0.0667308682 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
7 Hb_008705_070 0.0693847675 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
8 Hb_139460_010 0.070782958 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
9 Hb_003855_070 0.075012326 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
10 Hb_004185_040 0.0804572506 - - polygalacturonase, putative [Ricinus communis]
11 Hb_003052_070 0.0843599757 - - PREDICTED: peroxidase 11 [Jatropha curcas]
12 Hb_000567_310 0.0864847174 - - Miraculin precursor, putative [Ricinus communis]
13 Hb_011824_010 0.0878026578 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
14 Hb_002615_050 0.0918738365 - - ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_039342_030 0.0927453226 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000813_120 0.1038836043 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
17 Hb_006538_050 0.1055376754 - - hypothetical protein RCOM_1308310 [Ricinus communis]
18 Hb_010712_020 0.1059478275 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
19 Hb_000120_710 0.1067974726 - - unnamed protein product [Vitis vinifera]
20 Hb_000160_230 0.1078815975 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_025526_090 Hb_025526_090 Hb_001173_050 Hb_001173_050 Hb_025526_090--Hb_001173_050 Hb_011856_010 Hb_011856_010 Hb_025526_090--Hb_011856_010 Hb_000003_470 Hb_000003_470 Hb_025526_090--Hb_000003_470 Hb_001328_110 Hb_001328_110 Hb_025526_090--Hb_001328_110 Hb_016172_010 Hb_016172_010 Hb_025526_090--Hb_016172_010 Hb_008705_070 Hb_008705_070 Hb_025526_090--Hb_008705_070 Hb_001173_050--Hb_011856_010 Hb_139460_010 Hb_139460_010 Hb_001173_050--Hb_139460_010 Hb_004185_040 Hb_004185_040 Hb_001173_050--Hb_004185_040 Hb_000567_310 Hb_000567_310 Hb_001173_050--Hb_000567_310 Hb_001173_050--Hb_001328_110 Hb_011856_010--Hb_139460_010 Hb_011824_010 Hb_011824_010 Hb_011856_010--Hb_011824_010 Hb_002615_050 Hb_002615_050 Hb_011856_010--Hb_002615_050 Hb_011856_010--Hb_004185_040 Hb_003855_070 Hb_003855_070 Hb_000003_470--Hb_003855_070 Hb_000003_470--Hb_001328_110 Hb_000003_470--Hb_016172_010 Hb_000003_470--Hb_011856_010 Hb_000003_470--Hb_008705_070 Hb_001328_110--Hb_008705_070 Hb_003052_070 Hb_003052_070 Hb_001328_110--Hb_003052_070 Hb_006538_050 Hb_006538_050 Hb_001328_110--Hb_006538_050 Hb_000120_710 Hb_000120_710 Hb_001328_110--Hb_000120_710 Hb_001328_110--Hb_000567_310 Hb_039342_030 Hb_039342_030 Hb_016172_010--Hb_039342_030 Hb_016172_010--Hb_002615_050 Hb_016172_010--Hb_011824_010 Hb_016172_010--Hb_008705_070 Hb_006196_020 Hb_006196_020 Hb_016172_010--Hb_006196_020 Hb_008705_070--Hb_039342_030 Hb_008705_070--Hb_003052_070 Hb_042664_010 Hb_042664_010 Hb_008705_070--Hb_042664_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0072172 0.322346 0.0492392 0.109156 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.82576 0

CAGE analysis