Hb_000003_470

Information

Type -
Description -
Location Contig3: 332973-335964
Sequence    

Annotation

kegg
ID rcu:RCOM_1491260
description hypothetical protein
nr
ID XP_002515986.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9RQG7
description CASP-like protein 3A1 OS=Ricinus communis GN=RCOM_1491260 PE=2 SV=1
trembl
ID A0A067L9T8
description CASP-like protein OS=Jatropha curcas GN=JCGZ_24878 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 3a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_470 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_025526_090 0.0588060342 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
3 Hb_003855_070 0.0804037166 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
4 Hb_001328_110 0.0872708995 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
5 Hb_016172_010 0.0897765393 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
6 Hb_011856_010 0.0900665494 - - cytochrome P450, putative [Ricinus communis]
7 Hb_008705_070 0.0943813243 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
8 Hb_001173_050 0.0957967275 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
9 Hb_001218_020 0.0982812797 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
10 Hb_139460_010 0.100026216 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
11 Hb_098795_010 0.1047440823 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
12 Hb_002758_040 0.1077312663 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_003052_070 0.1081202171 - - PREDICTED: peroxidase 11 [Jatropha curcas]
14 Hb_000120_710 0.1088905562 - - unnamed protein product [Vitis vinifera]
15 Hb_002615_050 0.1094997681 - - ATP-binding cassette transporter, putative [Ricinus communis]
16 Hb_000567_310 0.1103491353 - - Miraculin precursor, putative [Ricinus communis]
17 Hb_011824_010 0.1122646981 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
18 Hb_002272_160 0.1129192707 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
19 Hb_000617_340 0.1133086595 - - respiratory burst oxidase B [Manihot esculenta]
20 Hb_006538_050 0.1134052587 - - hypothetical protein RCOM_1308310 [Ricinus communis]

Gene co-expression network

sample Hb_000003_470 Hb_000003_470 Hb_025526_090 Hb_025526_090 Hb_000003_470--Hb_025526_090 Hb_003855_070 Hb_003855_070 Hb_000003_470--Hb_003855_070 Hb_001328_110 Hb_001328_110 Hb_000003_470--Hb_001328_110 Hb_016172_010 Hb_016172_010 Hb_000003_470--Hb_016172_010 Hb_011856_010 Hb_011856_010 Hb_000003_470--Hb_011856_010 Hb_008705_070 Hb_008705_070 Hb_000003_470--Hb_008705_070 Hb_001173_050 Hb_001173_050 Hb_025526_090--Hb_001173_050 Hb_025526_090--Hb_011856_010 Hb_025526_090--Hb_001328_110 Hb_025526_090--Hb_016172_010 Hb_025526_090--Hb_008705_070 Hb_000301_030 Hb_000301_030 Hb_003855_070--Hb_000301_030 Hb_003855_070--Hb_025526_090 Hb_000120_710 Hb_000120_710 Hb_003855_070--Hb_000120_710 Hb_003855_070--Hb_001328_110 Hb_107258_010 Hb_107258_010 Hb_003855_070--Hb_107258_010 Hb_001328_110--Hb_008705_070 Hb_003052_070 Hb_003052_070 Hb_001328_110--Hb_003052_070 Hb_006538_050 Hb_006538_050 Hb_001328_110--Hb_006538_050 Hb_001328_110--Hb_000120_710 Hb_000567_310 Hb_000567_310 Hb_001328_110--Hb_000567_310 Hb_039342_030 Hb_039342_030 Hb_016172_010--Hb_039342_030 Hb_002615_050 Hb_002615_050 Hb_016172_010--Hb_002615_050 Hb_011824_010 Hb_011824_010 Hb_016172_010--Hb_011824_010 Hb_016172_010--Hb_008705_070 Hb_006196_020 Hb_006196_020 Hb_016172_010--Hb_006196_020 Hb_139460_010 Hb_139460_010 Hb_011856_010--Hb_139460_010 Hb_011856_010--Hb_001173_050 Hb_011856_010--Hb_011824_010 Hb_011856_010--Hb_002615_050 Hb_004185_040 Hb_004185_040 Hb_011856_010--Hb_004185_040 Hb_008705_070--Hb_039342_030 Hb_008705_070--Hb_003052_070 Hb_042664_010 Hb_042664_010 Hb_008705_070--Hb_042664_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102568 1.66899 0.264353 0.72235 0.0384493 0.022227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.8811 0

CAGE analysis