Hb_003855_070

Information

Type -
Description -
Location Contig3855: 113981-115414
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30980g
description POPTRDRAFT_798039; hypothetical protein
nr
ID XP_002298737.1
description hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
swissprot
ID Q9AT54
description Scopoletin glucosyltransferase OS=Nicotiana tabacum GN=TOGT1 PE=1 SV=1
trembl
ID B9GHC1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30980g PE=3 SV=1
Gene Ontology
ID GO:0047213
description scopoletin glucosyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003855_070 0.0 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
2 Hb_000301_030 0.0667942549 - - PREDICTED: pectate lyase-like [Jatropha curcas]
3 Hb_025526_090 0.075012326 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
4 Hb_000120_710 0.0756574019 - - unnamed protein product [Vitis vinifera]
5 Hb_001328_110 0.0759364745 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
6 Hb_107258_010 0.0760293156 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
7 Hb_000003_470 0.0804037166 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001544_040 0.0812692771 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
9 Hb_016172_010 0.0824112384 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
10 Hb_005356_010 0.0875052679 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
11 Hb_011824_010 0.0886538637 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
12 Hb_001863_290 0.088768346 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
13 Hb_011856_010 0.0890511618 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001218_020 0.0891643479 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
15 Hb_008705_070 0.0893361106 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
16 Hb_004564_010 0.0897327538 - - receptor-kinase, putative [Ricinus communis]
17 Hb_002615_050 0.092885705 - - ATP-binding cassette transporter, putative [Ricinus communis]
18 Hb_139460_010 0.0966453978 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
19 Hb_012660_010 0.096778878 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
20 Hb_006538_050 0.0981115518 - - hypothetical protein RCOM_1308310 [Ricinus communis]

Gene co-expression network

sample Hb_003855_070 Hb_003855_070 Hb_000301_030 Hb_000301_030 Hb_003855_070--Hb_000301_030 Hb_025526_090 Hb_025526_090 Hb_003855_070--Hb_025526_090 Hb_000120_710 Hb_000120_710 Hb_003855_070--Hb_000120_710 Hb_001328_110 Hb_001328_110 Hb_003855_070--Hb_001328_110 Hb_107258_010 Hb_107258_010 Hb_003855_070--Hb_107258_010 Hb_000003_470 Hb_000003_470 Hb_003855_070--Hb_000003_470 Hb_005356_010 Hb_005356_010 Hb_000301_030--Hb_005356_010 Hb_012660_010 Hb_012660_010 Hb_000301_030--Hb_012660_010 Hb_000301_030--Hb_107258_010 Hb_000648_120 Hb_000648_120 Hb_000301_030--Hb_000648_120 Hb_011486_030 Hb_011486_030 Hb_000301_030--Hb_011486_030 Hb_001173_050 Hb_001173_050 Hb_025526_090--Hb_001173_050 Hb_011856_010 Hb_011856_010 Hb_025526_090--Hb_011856_010 Hb_025526_090--Hb_000003_470 Hb_025526_090--Hb_001328_110 Hb_016172_010 Hb_016172_010 Hb_025526_090--Hb_016172_010 Hb_008705_070 Hb_008705_070 Hb_025526_090--Hb_008705_070 Hb_006538_050 Hb_006538_050 Hb_000120_710--Hb_006538_050 Hb_000120_710--Hb_001328_110 Hb_001544_040 Hb_001544_040 Hb_000120_710--Hb_001544_040 Hb_000617_340 Hb_000617_340 Hb_000120_710--Hb_000617_340 Hb_000513_110 Hb_000513_110 Hb_000120_710--Hb_000513_110 Hb_003253_020 Hb_003253_020 Hb_000120_710--Hb_003253_020 Hb_001328_110--Hb_008705_070 Hb_003052_070 Hb_003052_070 Hb_001328_110--Hb_003052_070 Hb_001328_110--Hb_006538_050 Hb_000567_310 Hb_000567_310 Hb_001328_110--Hb_000567_310 Hb_001863_290 Hb_001863_290 Hb_107258_010--Hb_001863_290 Hb_001442_080 Hb_001442_080 Hb_107258_010--Hb_001442_080 Hb_011824_010 Hb_011824_010 Hb_107258_010--Hb_011824_010 Hb_004564_010 Hb_004564_010 Hb_107258_010--Hb_004564_010 Hb_107258_010--Hb_012660_010 Hb_010712_020 Hb_010712_020 Hb_107258_010--Hb_010712_020 Hb_000003_470--Hb_001328_110 Hb_000003_470--Hb_016172_010 Hb_000003_470--Hb_011856_010 Hb_000003_470--Hb_008705_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0359062 1.40026 0.208932 0.838234 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.7009 0.0540355

CAGE analysis