Hb_011824_010

Information

Type -
Description -
Location Contig11824: 5369-5587
Sequence    

Annotation

kegg
ID rcu:RCOM_0852690
description Metalloendoproteinase 1 precursor, putative (EC:3.4.24.7)
nr
ID XP_002517411.1
description Metalloendoproteinase 1 precursor, putative [Ricinus communis]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID B9RUG6
description Metalloendoproteinase 1, putative OS=Ricinus communis GN=RCOM_0852690 PE=4 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011824_010 0.0 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
2 Hb_010712_020 0.0424341168 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
3 Hb_139460_010 0.0484231514 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
4 Hb_001863_290 0.0530671751 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
5 Hb_107258_010 0.0576142189 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
6 Hb_011856_010 0.0582849387 - - cytochrome P450, putative [Ricinus communis]
7 Hb_002615_050 0.0598672433 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_000160_230 0.0613778949 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
9 Hb_007810_140 0.0619872829 - - Ankyrin repeat-containing protein [Medicago truncatula]
10 Hb_016172_010 0.0682927414 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
11 Hb_001141_170 0.0696234875 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
12 Hb_000859_040 0.0731687472 - - Early nodulin 16 precursor, putative [Ricinus communis]
13 Hb_004564_010 0.0753819718 - - receptor-kinase, putative [Ricinus communis]
14 Hb_001442_080 0.0861447371 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
15 Hb_004195_040 0.0862268565 - - salicylic acid methyl transferase [Capsicum annuum]
16 Hb_025526_090 0.0878026578 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
17 Hb_003855_070 0.0886538637 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
18 Hb_012019_030 0.0897805308 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
19 Hb_064398_010 0.0899626624 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001173_050 0.0903627955 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_011824_010 Hb_011824_010 Hb_010712_020 Hb_010712_020 Hb_011824_010--Hb_010712_020 Hb_139460_010 Hb_139460_010 Hb_011824_010--Hb_139460_010 Hb_001863_290 Hb_001863_290 Hb_011824_010--Hb_001863_290 Hb_107258_010 Hb_107258_010 Hb_011824_010--Hb_107258_010 Hb_011856_010 Hb_011856_010 Hb_011824_010--Hb_011856_010 Hb_002615_050 Hb_002615_050 Hb_011824_010--Hb_002615_050 Hb_010712_020--Hb_001863_290 Hb_001141_170 Hb_001141_170 Hb_010712_020--Hb_001141_170 Hb_000160_230 Hb_000160_230 Hb_010712_020--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_010712_020--Hb_007810_140 Hb_064398_010 Hb_064398_010 Hb_010712_020--Hb_064398_010 Hb_139460_010--Hb_011856_010 Hb_139460_010--Hb_002615_050 Hb_001173_050 Hb_001173_050 Hb_139460_010--Hb_001173_050 Hb_139460_010--Hb_000160_230 Hb_139460_010--Hb_007810_140 Hb_001863_290--Hb_107258_010 Hb_001442_080 Hb_001442_080 Hb_001863_290--Hb_001442_080 Hb_004564_010 Hb_004564_010 Hb_001863_290--Hb_004564_010 Hb_001863_290--Hb_064398_010 Hb_107258_010--Hb_001442_080 Hb_107258_010--Hb_004564_010 Hb_012660_010 Hb_012660_010 Hb_107258_010--Hb_012660_010 Hb_107258_010--Hb_010712_020 Hb_011856_010--Hb_001173_050 Hb_025526_090 Hb_025526_090 Hb_011856_010--Hb_025526_090 Hb_011856_010--Hb_002615_050 Hb_004185_040 Hb_004185_040 Hb_011856_010--Hb_004185_040 Hb_002615_050--Hb_007810_140 Hb_002615_050--Hb_000160_230 Hb_006196_020 Hb_006196_020 Hb_002615_050--Hb_006196_020 Hb_000859_040 Hb_000859_040 Hb_002615_050--Hb_000859_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 37.6272 1.87412 8.42625 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 227.066 0.969039

CAGE analysis