Hb_007810_140

Information

Type -
Description -
Location Contig7810: 104975-107892
Sequence    

Annotation

kegg
ID mtr:MTR_4g090050
description Ankyrin repeat-containing protein
nr
ID XP_003608143.1
description Ankyrin repeat-containing protein [Medicago truncatula]
swissprot
ID Q54KA7
description Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1
trembl
ID V4TQK8
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019454mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007810_140 0.0 - - Ankyrin repeat-containing protein [Medicago truncatula]
2 Hb_000160_230 0.014695522 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
3 Hb_000859_040 0.0211294875 - - Early nodulin 16 precursor, putative [Ricinus communis]
4 Hb_002615_050 0.0405801803 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_006196_020 0.0537585713 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
6 Hb_011824_010 0.0619872829 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
7 Hb_139460_010 0.0686117496 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
8 Hb_001410_090 0.0694812829 - - transferase, putative [Ricinus communis]
9 Hb_010712_020 0.0703547547 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
10 Hb_001114_300 0.076268661 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_001141_170 0.0773404172 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
12 Hb_039342_030 0.0784407275 - - conserved hypothetical protein [Ricinus communis]
13 Hb_016172_010 0.0785049757 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
14 Hb_004564_010 0.0823299617 - - receptor-kinase, putative [Ricinus communis]
15 Hb_001863_290 0.0853197264 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
16 Hb_011856_010 0.0855232776 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000488_040 0.0873062605 - - unnamed protein product [Vitis vinifera]
18 Hb_012019_030 0.087841803 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
19 Hb_001999_220 0.091615734 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
20 Hb_004195_040 0.0937278058 - - salicylic acid methyl transferase [Capsicum annuum]

Gene co-expression network

sample Hb_007810_140 Hb_007810_140 Hb_000160_230 Hb_000160_230 Hb_007810_140--Hb_000160_230 Hb_000859_040 Hb_000859_040 Hb_007810_140--Hb_000859_040 Hb_002615_050 Hb_002615_050 Hb_007810_140--Hb_002615_050 Hb_006196_020 Hb_006196_020 Hb_007810_140--Hb_006196_020 Hb_011824_010 Hb_011824_010 Hb_007810_140--Hb_011824_010 Hb_139460_010 Hb_139460_010 Hb_007810_140--Hb_139460_010 Hb_000160_230--Hb_000859_040 Hb_000160_230--Hb_002615_050 Hb_000160_230--Hb_006196_020 Hb_000160_230--Hb_011824_010 Hb_010712_020 Hb_010712_020 Hb_000160_230--Hb_010712_020 Hb_001410_090 Hb_001410_090 Hb_000859_040--Hb_001410_090 Hb_001114_300 Hb_001114_300 Hb_000859_040--Hb_001114_300 Hb_000859_040--Hb_002615_050 Hb_000859_040--Hb_006196_020 Hb_002615_050--Hb_006196_020 Hb_002615_050--Hb_011824_010 Hb_002615_050--Hb_139460_010 Hb_042664_010 Hb_042664_010 Hb_006196_020--Hb_042664_010 Hb_039342_030 Hb_039342_030 Hb_006196_020--Hb_039342_030 Hb_011824_010--Hb_010712_020 Hb_011824_010--Hb_139460_010 Hb_001863_290 Hb_001863_290 Hb_011824_010--Hb_001863_290 Hb_107258_010 Hb_107258_010 Hb_011824_010--Hb_107258_010 Hb_011856_010 Hb_011856_010 Hb_011824_010--Hb_011856_010 Hb_139460_010--Hb_011856_010 Hb_001173_050 Hb_001173_050 Hb_139460_010--Hb_001173_050 Hb_139460_010--Hb_000160_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.208135 0.00788034 0.0287425 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.45529 0

CAGE analysis