Hb_000648_120

Information

Type -
Description -
Location Contig648: 140815-142827
Sequence    

Annotation

kegg
ID vvi:100246749
description L-type lectin-domain containing receptor kinase IV.1
nr
ID XP_002280641.1
description PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
swissprot
ID Q9M345
description L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana GN=LECRK42 PE=2 SV=1
trembl
ID F6GUY7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g05170 PE=3 SV=1
Gene Ontology
ID GO:0004693
description concanavalin a-like lectin protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000648_120 0.0 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
2 Hb_000301_030 0.0893705837 - - PREDICTED: pectate lyase-like [Jatropha curcas]
3 Hb_000281_200 0.0970965622 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
4 Hb_000245_140 0.1001274417 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
5 Hb_020332_040 0.1036973201 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
6 Hb_000135_050 0.1038312342 - - PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like isoform X2 [Citrus sinensis]
7 Hb_001544_040 0.1070481422 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
8 Hb_005356_010 0.1093164209 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
9 Hb_011486_030 0.1098626749 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
10 Hb_012660_010 0.1099377868 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
11 Hb_002232_370 0.1107522032 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
12 Hb_003855_070 0.1109613727 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
13 Hb_027141_010 0.1147585947 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_000438_190 0.1155386475 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
15 Hb_000189_260 0.1155826957 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000076_200 0.1202616222 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007527_020 0.122807896 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
18 Hb_001288_010 0.1249689099 - - -
19 Hb_000563_610 0.1255459798 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
20 Hb_000617_340 0.1256817359 - - respiratory burst oxidase B [Manihot esculenta]

Gene co-expression network

sample Hb_000648_120 Hb_000648_120 Hb_000301_030 Hb_000301_030 Hb_000648_120--Hb_000301_030 Hb_000281_200 Hb_000281_200 Hb_000648_120--Hb_000281_200 Hb_000245_140 Hb_000245_140 Hb_000648_120--Hb_000245_140 Hb_020332_040 Hb_020332_040 Hb_000648_120--Hb_020332_040 Hb_000135_050 Hb_000135_050 Hb_000648_120--Hb_000135_050 Hb_001544_040 Hb_001544_040 Hb_000648_120--Hb_001544_040 Hb_003855_070 Hb_003855_070 Hb_000301_030--Hb_003855_070 Hb_005356_010 Hb_005356_010 Hb_000301_030--Hb_005356_010 Hb_012660_010 Hb_012660_010 Hb_000301_030--Hb_012660_010 Hb_107258_010 Hb_107258_010 Hb_000301_030--Hb_107258_010 Hb_011486_030 Hb_011486_030 Hb_000301_030--Hb_011486_030 Hb_001288_010 Hb_001288_010 Hb_000281_200--Hb_001288_010 Hb_000281_200--Hb_005356_010 Hb_007527_020 Hb_007527_020 Hb_000281_200--Hb_007527_020 Hb_003968_020 Hb_003968_020 Hb_000281_200--Hb_003968_020 Hb_178389_020 Hb_178389_020 Hb_000281_200--Hb_178389_020 Hb_039655_010 Hb_039655_010 Hb_000281_200--Hb_039655_010 Hb_002232_370 Hb_002232_370 Hb_000245_140--Hb_002232_370 Hb_002965_020 Hb_002965_020 Hb_000245_140--Hb_002965_020 Hb_148914_010 Hb_148914_010 Hb_000245_140--Hb_148914_010 Hb_000976_020 Hb_000976_020 Hb_000245_140--Hb_000976_020 Hb_000563_610 Hb_000563_610 Hb_000245_140--Hb_000563_610 Hb_020332_040--Hb_012660_010 Hb_000189_260 Hb_000189_260 Hb_020332_040--Hb_000189_260 Hb_002048_010 Hb_002048_010 Hb_020332_040--Hb_002048_010 Hb_020332_040--Hb_011486_030 Hb_027141_010 Hb_027141_010 Hb_020332_040--Hb_027141_010 Hb_020332_040--Hb_000976_020 Hb_000135_050--Hb_000281_200 Hb_000135_050--Hb_000189_260 Hb_159769_010 Hb_159769_010 Hb_000135_050--Hb_159769_010 Hb_000135_050--Hb_011486_030 Hb_000135_050--Hb_020332_040 Hb_000120_710 Hb_000120_710 Hb_001544_040--Hb_000120_710 Hb_010407_120 Hb_010407_120 Hb_001544_040--Hb_010407_120 Hb_003253_020 Hb_003253_020 Hb_001544_040--Hb_003253_020 Hb_000617_340 Hb_000617_340 Hb_001544_040--Hb_000617_340 Hb_000513_110 Hb_000513_110 Hb_001544_040--Hb_000513_110 Hb_001544_040--Hb_005356_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108064 2.0144 0.493905 2.0875 0.0191035 0.0835861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0705214 0.133754 22.3597 0.558997

CAGE analysis