Hb_000245_140

Information

Type -
Description -
Location Contig245: 127074-129883
Sequence    

Annotation

kegg
ID rcu:RCOM_1491260
description hypothetical protein
nr
ID XP_012069108.1
description PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
swissprot
ID B9RQG7
description CASP-like protein 3A1 OS=Ricinus communis GN=RCOM_1491260 PE=2 SV=1
trembl
ID A0A067L9T8
description CASP-like protein OS=Jatropha curcas GN=JCGZ_24878 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 3a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_140 0.0 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
2 Hb_002232_370 0.0667845991 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
3 Hb_002965_020 0.0821565628 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
4 Hb_148914_010 0.0951501481 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_000976_020 0.0982380385 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
6 Hb_000648_120 0.1001274417 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
7 Hb_000563_610 0.1009922203 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
8 Hb_012796_050 0.105530015 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
9 Hb_002048_010 0.1087164002 - - unknown [Lotus japonicus]
10 Hb_000438_190 0.1088611468 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
11 Hb_001544_040 0.1095965873 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
12 Hb_001168_010 0.1116717986 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
13 Hb_008225_080 0.1117375531 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
14 Hb_004445_090 0.1117618445 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008406_010 0.1139322259 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
16 Hb_010407_120 0.1139745234 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
17 Hb_001357_260 0.1153779434 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_020332_040 0.1155740559 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
19 Hb_002917_010 0.1158985999 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
20 Hb_000189_260 0.1173357108 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000245_140 Hb_000245_140 Hb_002232_370 Hb_002232_370 Hb_000245_140--Hb_002232_370 Hb_002965_020 Hb_002965_020 Hb_000245_140--Hb_002965_020 Hb_148914_010 Hb_148914_010 Hb_000245_140--Hb_148914_010 Hb_000976_020 Hb_000976_020 Hb_000245_140--Hb_000976_020 Hb_000648_120 Hb_000648_120 Hb_000245_140--Hb_000648_120 Hb_000563_610 Hb_000563_610 Hb_000245_140--Hb_000563_610 Hb_000438_190 Hb_000438_190 Hb_002232_370--Hb_000438_190 Hb_002232_370--Hb_148914_010 Hb_002232_370--Hb_002965_020 Hb_002232_400 Hb_002232_400 Hb_002232_370--Hb_002232_400 Hb_012796_050 Hb_012796_050 Hb_002232_370--Hb_012796_050 Hb_002048_010 Hb_002048_010 Hb_002965_020--Hb_002048_010 Hb_002965_020--Hb_000976_020 Hb_008080_040 Hb_008080_040 Hb_002965_020--Hb_008080_040 Hb_001357_260 Hb_001357_260 Hb_002965_020--Hb_001357_260 Hb_002917_010 Hb_002917_010 Hb_002965_020--Hb_002917_010 Hb_148914_010--Hb_012796_050 Hb_148914_010--Hb_000438_190 Hb_148914_010--Hb_002965_020 Hb_010407_120 Hb_010407_120 Hb_148914_010--Hb_010407_120 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_000976_020--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_000976_020--Hb_000189_260 Hb_020332_040 Hb_020332_040 Hb_000976_020--Hb_020332_040 Hb_000301_030 Hb_000301_030 Hb_000648_120--Hb_000301_030 Hb_000281_200 Hb_000281_200 Hb_000648_120--Hb_000281_200 Hb_000648_120--Hb_020332_040 Hb_000135_050 Hb_000135_050 Hb_000648_120--Hb_000135_050 Hb_001544_040 Hb_001544_040 Hb_000648_120--Hb_001544_040 Hb_004055_180 Hb_004055_180 Hb_000563_610--Hb_004055_180 Hb_000739_130 Hb_000739_130 Hb_000563_610--Hb_000739_130 Hb_097908_010 Hb_097908_010 Hb_000563_610--Hb_097908_010 Hb_000563_610--Hb_012796_050 Hb_004774_060 Hb_004774_060 Hb_000563_610--Hb_004774_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0446996 3.57626 2.08826 2.27165 0.114392 0.0388685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0454665 0.107286 0.13237 31.9494 0.66237

CAGE analysis