Hb_000739_130

Information

Type -
Description -
Location Contig739: 136378-137980
Sequence    

Annotation

kegg
ID rcu:RCOM_1612210
description hypothetical protein
nr
ID XP_002511722.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDD4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1612210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000563_610 0.0983637337 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
3 Hb_007532_050 0.1134131361 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
4 Hb_007527_020 0.1144645242 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
5 Hb_010407_120 0.1219289462 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
6 Hb_004445_090 0.1262768775 - - conserved hypothetical protein [Ricinus communis]
7 Hb_159769_010 0.1334672624 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
8 Hb_000648_120 0.1352387995 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
9 Hb_003090_070 0.1378582811 - - PREDICTED: laccase-7 [Jatropha curcas]
10 Hb_000281_200 0.138268125 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
11 Hb_000059_100 0.1393156796 - - Basic blue protein, putative [Ricinus communis]
12 Hb_000245_140 0.1393297419 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
13 Hb_002805_230 0.1409305444 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
14 Hb_001544_040 0.1416262004 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
15 Hb_000513_110 0.1456207164 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
16 Hb_005356_010 0.1468559757 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
17 Hb_000076_200 0.1470109783 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004055_180 0.1485820952 - - cell wall invertase [Manihot esculenta]
19 Hb_001366_250 0.1491393951 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
20 Hb_001699_240 0.149651266 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_000739_130 Hb_000739_130 Hb_000563_610 Hb_000563_610 Hb_000739_130--Hb_000563_610 Hb_007532_050 Hb_007532_050 Hb_000739_130--Hb_007532_050 Hb_007527_020 Hb_007527_020 Hb_000739_130--Hb_007527_020 Hb_010407_120 Hb_010407_120 Hb_000739_130--Hb_010407_120 Hb_004445_090 Hb_004445_090 Hb_000739_130--Hb_004445_090 Hb_159769_010 Hb_159769_010 Hb_000739_130--Hb_159769_010 Hb_004055_180 Hb_004055_180 Hb_000563_610--Hb_004055_180 Hb_000245_140 Hb_000245_140 Hb_000563_610--Hb_000245_140 Hb_097908_010 Hb_097908_010 Hb_000563_610--Hb_097908_010 Hb_012796_050 Hb_012796_050 Hb_000563_610--Hb_012796_050 Hb_004774_060 Hb_004774_060 Hb_000563_610--Hb_004774_060 Hb_002805_230 Hb_002805_230 Hb_007532_050--Hb_002805_230 Hb_003090_070 Hb_003090_070 Hb_007532_050--Hb_003090_070 Hb_000059_100 Hb_000059_100 Hb_007532_050--Hb_000059_100 Hb_000318_440 Hb_000318_440 Hb_007532_050--Hb_000318_440 Hb_000076_200 Hb_000076_200 Hb_007532_050--Hb_000076_200 Hb_007532_050--Hb_007527_020 Hb_005356_010 Hb_005356_010 Hb_007527_020--Hb_005356_010 Hb_007527_020--Hb_002805_230 Hb_000281_200 Hb_000281_200 Hb_007527_020--Hb_000281_200 Hb_000513_110 Hb_000513_110 Hb_007527_020--Hb_000513_110 Hb_001544_040 Hb_001544_040 Hb_007527_020--Hb_001544_040 Hb_010407_120--Hb_001544_040 Hb_010407_120--Hb_007532_050 Hb_000933_200 Hb_000933_200 Hb_010407_120--Hb_000933_200 Hb_010407_120--Hb_007527_020 Hb_003253_020 Hb_003253_020 Hb_010407_120--Hb_003253_020 Hb_000438_190 Hb_000438_190 Hb_010407_120--Hb_000438_190 Hb_004445_090--Hb_000245_140 Hb_004445_090--Hb_000563_610 Hb_000204_030 Hb_000204_030 Hb_004445_090--Hb_000204_030 Hb_002232_370 Hb_002232_370 Hb_004445_090--Hb_002232_370 Hb_004445_090--Hb_000438_190 Hb_039655_010 Hb_039655_010 Hb_159769_010--Hb_039655_010 Hb_159769_010--Hb_000281_200 Hb_000135_050 Hb_000135_050 Hb_159769_010--Hb_000135_050 Hb_022250_050 Hb_022250_050 Hb_159769_010--Hb_022250_050 Hb_159769_010--Hb_005356_010 Hb_159769_010--Hb_007527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0450116 0.614142 0.943912 1.7359 0.126864 0.068542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104607 0 0.286535 19.7507 0.316954

CAGE analysis