Hb_004055_180

Information

Type -
Description -
Location Contig4055: 123761-145640
Sequence    

Annotation

kegg
ID egr:104449979
description beta-fructofuranosidase, insoluble isoenzyme CWINV1-like
nr
ID AFA46812.1
description cell wall invertase [Manihot esculenta]
swissprot
ID Q70XE6
description Fructan 6-exohydrolase OS=Beta vulgaris GN=6-FEH PE=1 SV=1
trembl
ID H6V7I5
description Cell wall invertase OS=Manihot esculenta GN=CWINV3 PE=2 SV=1
Gene Ontology
ID GO:0004575
description beta- cell wall isozyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40231: 123564-127206 , PASA_asmbl_40232: 126326-126762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_180 0.0 - - cell wall invertase [Manihot esculenta]
2 Hb_004774_060 0.0686607104 - - -
3 Hb_097908_010 0.076991981 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
4 Hb_001464_010 0.0861853232 - - PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Populus euphratica]
5 Hb_000563_610 0.0923736146 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
6 Hb_175968_010 0.095437814 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
7 Hb_007417_020 0.0969289291 - - Reticuline oxidase precursor, putative [Ricinus communis]
8 Hb_029571_010 0.0997814807 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
9 Hb_033363_080 0.1027571769 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
10 Hb_000659_010 0.1041366863 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
11 Hb_004222_010 0.1045829437 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
12 Hb_001279_220 0.1059042156 - - protein binding protein, putative [Ricinus communis]
13 Hb_002248_020 0.110691443 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
14 Hb_061195_010 0.114606013 - - Galactose oxidase precursor, putative [Ricinus communis]
15 Hb_012239_080 0.1163103747 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
16 Hb_012796_050 0.1185446787 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
17 Hb_004712_080 0.1185777226 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
18 Hb_000487_150 0.1228945655 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
19 Hb_001134_040 0.1265639618 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
20 Hb_004195_240 0.1271669157 - - Peroxidase 72 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004055_180 Hb_004055_180 Hb_004774_060 Hb_004774_060 Hb_004055_180--Hb_004774_060 Hb_097908_010 Hb_097908_010 Hb_004055_180--Hb_097908_010 Hb_001464_010 Hb_001464_010 Hb_004055_180--Hb_001464_010 Hb_000563_610 Hb_000563_610 Hb_004055_180--Hb_000563_610 Hb_175968_010 Hb_175968_010 Hb_004055_180--Hb_175968_010 Hb_007417_020 Hb_007417_020 Hb_004055_180--Hb_007417_020 Hb_004774_060--Hb_175968_010 Hb_001279_220 Hb_001279_220 Hb_004774_060--Hb_001279_220 Hb_033363_080 Hb_033363_080 Hb_004774_060--Hb_033363_080 Hb_004774_060--Hb_097908_010 Hb_000659_010 Hb_000659_010 Hb_004774_060--Hb_000659_010 Hb_097908_010--Hb_175968_010 Hb_097908_010--Hb_001464_010 Hb_097908_010--Hb_000659_010 Hb_097908_010--Hb_007417_020 Hb_001464_010--Hb_007417_020 Hb_135392_010 Hb_135392_010 Hb_001464_010--Hb_135392_010 Hb_001134_040 Hb_001134_040 Hb_001464_010--Hb_001134_040 Hb_007491_010 Hb_007491_010 Hb_001464_010--Hb_007491_010 Hb_000739_130 Hb_000739_130 Hb_000563_610--Hb_000739_130 Hb_000245_140 Hb_000245_140 Hb_000563_610--Hb_000245_140 Hb_000563_610--Hb_097908_010 Hb_012796_050 Hb_012796_050 Hb_000563_610--Hb_012796_050 Hb_000563_610--Hb_004774_060 Hb_175968_010--Hb_001279_220 Hb_175968_010--Hb_000659_010 Hb_004222_010 Hb_004222_010 Hb_175968_010--Hb_004222_010 Hb_007417_020--Hb_135392_010 Hb_007417_020--Hb_001134_040 Hb_007417_020--Hb_007491_010 Hb_003090_070 Hb_003090_070 Hb_007417_020--Hb_003090_070 Hb_002805_230 Hb_002805_230 Hb_007417_020--Hb_002805_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.289077 0.884826 0.449952 0 0.00415707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0431608 0.00849154 0.0163095 11.0684 0.564134

CAGE analysis