Hb_175968_010

Information

Type -
Description -
Location Contig175968: 1-1104
Sequence    

Annotation

kegg
ID rcu:RCOM_0905990
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID KDP20810.1
description hypothetical protein JCGZ_21281 [Jatropha curcas]
swissprot
ID Q8GYA4
description Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3
trembl
ID A0A067JLD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21281 PE=4 SV=1
Gene Ontology
ID GO:0004674
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175968_010 0.0 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
2 Hb_001279_220 0.0605642424 - - protein binding protein, putative [Ricinus communis]
3 Hb_004774_060 0.0668839676 - - -
4 Hb_000659_010 0.0716551562 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
5 Hb_004222_010 0.0836530022 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
6 Hb_097908_010 0.0941290394 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
7 Hb_004055_180 0.095437814 - - cell wall invertase [Manihot esculenta]
8 Hb_033363_080 0.0965152477 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
9 Hb_001454_300 0.1003235492 - - nucleotide binding protein, putative [Ricinus communis]
10 Hb_004712_080 0.1032432596 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
11 Hb_022815_020 0.1033120023 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
12 Hb_012796_050 0.1183234936 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
13 Hb_148914_010 0.1234725333 - - glutathione s-transferase, putative [Ricinus communis]
14 Hb_001464_010 0.1238049976 - - PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Populus euphratica]
15 Hb_029571_010 0.1277512323 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
16 Hb_002048_010 0.1283061972 - - unknown [Lotus japonicus]
17 Hb_001369_320 0.1290645986 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
18 Hb_004195_240 0.1313607759 - - Peroxidase 72 precursor, putative [Ricinus communis]
19 Hb_001003_020 0.1329477164 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
20 Hb_000563_610 0.1334365613 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]

Gene co-expression network

sample Hb_175968_010 Hb_175968_010 Hb_001279_220 Hb_001279_220 Hb_175968_010--Hb_001279_220 Hb_004774_060 Hb_004774_060 Hb_175968_010--Hb_004774_060 Hb_000659_010 Hb_000659_010 Hb_175968_010--Hb_000659_010 Hb_004222_010 Hb_004222_010 Hb_175968_010--Hb_004222_010 Hb_097908_010 Hb_097908_010 Hb_175968_010--Hb_097908_010 Hb_004055_180 Hb_004055_180 Hb_175968_010--Hb_004055_180 Hb_001279_220--Hb_004774_060 Hb_001454_300 Hb_001454_300 Hb_001279_220--Hb_001454_300 Hb_001369_320 Hb_001369_320 Hb_001279_220--Hb_001369_320 Hb_001279_220--Hb_000659_010 Hb_004712_080 Hb_004712_080 Hb_001279_220--Hb_004712_080 Hb_004774_060--Hb_004055_180 Hb_033363_080 Hb_033363_080 Hb_004774_060--Hb_033363_080 Hb_004774_060--Hb_097908_010 Hb_004774_060--Hb_000659_010 Hb_022815_020 Hb_022815_020 Hb_000659_010--Hb_022815_020 Hb_000659_010--Hb_004222_010 Hb_001003_020 Hb_001003_020 Hb_000659_010--Hb_001003_020 Hb_035726_020 Hb_035726_020 Hb_000659_010--Hb_035726_020 Hb_004222_010--Hb_022815_020 Hb_004222_010--Hb_001003_020 Hb_004222_010--Hb_004055_180 Hb_004222_010--Hb_097908_010 Hb_097908_010--Hb_004055_180 Hb_001464_010 Hb_001464_010 Hb_097908_010--Hb_001464_010 Hb_097908_010--Hb_000659_010 Hb_007417_020 Hb_007417_020 Hb_097908_010--Hb_007417_020 Hb_004055_180--Hb_001464_010 Hb_000563_610 Hb_000563_610 Hb_004055_180--Hb_000563_610 Hb_004055_180--Hb_007417_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0476094 0.0810308 0.0421857 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.941114 0.0945033

CAGE analysis