Hb_001369_320

Information

Type -
Description -
Location Contig1369: 297917-299103
Sequence    

Annotation

kegg
ID rcu:RCOM_1500470
description axonemal dynein light chain, putative
nr
ID XP_012090451.1
description PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
swissprot
ID Q86A88
description Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1
trembl
ID A0A067JSA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26260 PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10166: 297890-298999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_320 0.0 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
2 Hb_001454_300 0.0815554796 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_001279_220 0.0940837821 - - protein binding protein, putative [Ricinus communis]
4 Hb_000057_160 0.1012592542 - - hypothetical protein JCGZ_06279 [Jatropha curcas]
5 Hb_001775_050 0.1045146734 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
6 Hb_129204_050 0.1243993154 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 330-like [Prunus mume]
7 Hb_020902_020 0.1256164291 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
8 Hb_175968_010 0.1290645986 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
9 Hb_004712_080 0.1453877215 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
10 Hb_004774_060 0.1459390527 - - -
11 Hb_000705_060 0.146783482 - - hypothetical protein TRIUR3_06087 [Triticum urartu]
12 Hb_000484_040 0.1489998303 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
13 Hb_029571_010 0.150594001 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
14 Hb_001005_210 0.1593455056 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
15 Hb_001691_060 0.1607388641 - - lipoxygenase, putative [Ricinus communis]
16 Hb_008080_050 0.1631881501 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002248_020 0.1632512403 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
18 Hb_009486_100 0.1644241083 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_004222_010 0.1669585082 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
20 Hb_004055_180 0.1681356826 - - cell wall invertase [Manihot esculenta]

Gene co-expression network

sample Hb_001369_320 Hb_001369_320 Hb_001454_300 Hb_001454_300 Hb_001369_320--Hb_001454_300 Hb_001279_220 Hb_001279_220 Hb_001369_320--Hb_001279_220 Hb_000057_160 Hb_000057_160 Hb_001369_320--Hb_000057_160 Hb_001775_050 Hb_001775_050 Hb_001369_320--Hb_001775_050 Hb_129204_050 Hb_129204_050 Hb_001369_320--Hb_129204_050 Hb_020902_020 Hb_020902_020 Hb_001369_320--Hb_020902_020 Hb_001454_300--Hb_001279_220 Hb_175968_010 Hb_175968_010 Hb_001454_300--Hb_175968_010 Hb_004712_080 Hb_004712_080 Hb_001454_300--Hb_004712_080 Hb_001691_060 Hb_001691_060 Hb_001454_300--Hb_001691_060 Hb_001454_300--Hb_001775_050 Hb_001279_220--Hb_175968_010 Hb_004774_060 Hb_004774_060 Hb_001279_220--Hb_004774_060 Hb_000659_010 Hb_000659_010 Hb_001279_220--Hb_000659_010 Hb_001279_220--Hb_004712_080 Hb_000057_160--Hb_001775_050 Hb_000057_160--Hb_001279_220 Hb_000057_160--Hb_001454_300 Hb_000057_160--Hb_129204_050 Hb_029571_010 Hb_029571_010 Hb_000057_160--Hb_029571_010 Hb_001775_050--Hb_020902_020 Hb_001775_050--Hb_129204_050 Hb_005653_100 Hb_005653_100 Hb_001775_050--Hb_005653_100 Hb_000705_100 Hb_000705_100 Hb_129204_050--Hb_000705_100 Hb_000705_060 Hb_000705_060 Hb_129204_050--Hb_000705_060 Hb_001101_020 Hb_001101_020 Hb_129204_050--Hb_001101_020 Hb_001609_080 Hb_001609_080 Hb_020902_020--Hb_001609_080 Hb_008080_040 Hb_008080_040 Hb_020902_020--Hb_008080_040 Hb_020902_020--Hb_005653_100 Hb_000407_110 Hb_000407_110 Hb_020902_020--Hb_000407_110 Hb_020902_020--Hb_001454_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.258075 0.737726 0.0631408 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.58315 0.366758

CAGE analysis