Hb_000705_060

Information

Type -
Description -
Location Contig705: 46931-66781
Sequence    

Annotation

kegg
ID egr:104431328
description glutathione transferase GST 23-like
nr
ID EMS49222.1
description hypothetical protein TRIUR3_06087 [Triticum urartu]
swissprot
ID -
description -
trembl
ID M7YPA3
description Uncharacterized protein OS=Triticum urartu GN=TRIUR3_06087 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55061: 57122-70228
cDNA
(Sanger)
(ID:Location)		 021_K22.ab1: 57169-70228

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_060 0.0 - - hypothetical protein TRIUR3_06087 [Triticum urartu]
2 Hb_129204_050 0.1187052592 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 330-like [Prunus mume]
3 Hb_000705_100 0.1221951984 - - glutathione s-transferase, putative [Ricinus communis]
4 Hb_000215_420 0.1412484551 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
5 Hb_001775_050 0.146342528 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
6 Hb_001369_320 0.146783482 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
7 Hb_000705_090 0.1579264614 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
8 Hb_106321_010 0.1723783628 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
9 Hb_000484_040 0.1735933746 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
10 Hb_001454_300 0.1772683675 - - nucleotide binding protein, putative [Ricinus communis]
11 Hb_001101_020 0.1835298841 - - hypothetical protein RCOM_0615680 [Ricinus communis]
12 Hb_000057_160 0.1866421557 - - hypothetical protein JCGZ_06279 [Jatropha curcas]
13 Hb_001005_210 0.1914954483 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
14 Hb_020902_020 0.192116598 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
15 Hb_005168_030 0.1964222941 - - unknown [Zea mays]
16 Hb_002003_030 0.1988038637 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
17 Hb_000566_110 0.1991110693 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
18 Hb_024570_020 0.1993838154 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
19 Hb_000101_370 0.2019818913 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
20 Hb_002989_030 0.2023091539 - - PREDICTED: protein GAST1-like [Populus euphratica]

Gene co-expression network

sample Hb_000705_060 Hb_000705_060 Hb_129204_050 Hb_129204_050 Hb_000705_060--Hb_129204_050 Hb_000705_100 Hb_000705_100 Hb_000705_060--Hb_000705_100 Hb_000215_420 Hb_000215_420 Hb_000705_060--Hb_000215_420 Hb_001775_050 Hb_001775_050 Hb_000705_060--Hb_001775_050 Hb_001369_320 Hb_001369_320 Hb_000705_060--Hb_001369_320 Hb_000705_090 Hb_000705_090 Hb_000705_060--Hb_000705_090 Hb_129204_050--Hb_001775_050 Hb_129204_050--Hb_000705_100 Hb_001101_020 Hb_001101_020 Hb_129204_050--Hb_001101_020 Hb_129204_050--Hb_001369_320 Hb_000057_160 Hb_000057_160 Hb_129204_050--Hb_000057_160 Hb_000705_100--Hb_000215_420 Hb_000705_100--Hb_000705_090 Hb_000705_100--Hb_001101_020 Hb_000705_100--Hb_001775_050 Hb_106321_010 Hb_106321_010 Hb_000215_420--Hb_106321_010 Hb_000101_370 Hb_000101_370 Hb_000215_420--Hb_000101_370 Hb_004519_010 Hb_004519_010 Hb_000215_420--Hb_004519_010 Hb_000215_420--Hb_000705_090 Hb_001019_210 Hb_001019_210 Hb_000215_420--Hb_001019_210 Hb_020902_020 Hb_020902_020 Hb_001775_050--Hb_020902_020 Hb_001775_050--Hb_001369_320 Hb_001775_050--Hb_000057_160 Hb_005653_100 Hb_005653_100 Hb_001775_050--Hb_005653_100 Hb_001454_300 Hb_001454_300 Hb_001775_050--Hb_001454_300 Hb_001369_320--Hb_001454_300 Hb_001279_220 Hb_001279_220 Hb_001369_320--Hb_001279_220 Hb_001369_320--Hb_000057_160 Hb_001369_320--Hb_020902_020 Hb_000705_090--Hb_106321_010 Hb_164300_010 Hb_164300_010 Hb_000705_090--Hb_164300_010 Hb_005168_030 Hb_005168_030 Hb_000705_090--Hb_005168_030 Hb_002003_030 Hb_002003_030 Hb_000705_090--Hb_002003_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.08296 5.51846 0.20945 0 0.0183071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0399726 0.157217 0.11706 13.1723 1.43261

CAGE analysis