Hb_004519_010

Information

Type -
Description -
Location Contig4519: 2579-3055
Sequence    

Annotation

kegg
ID rcu:RCOM_1381800
description Protein PRY2 precursor, putative
nr
ID XP_012074522.1
description PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]
swissprot
ID P11670
description Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1
trembl
ID B9S7U6
description Protein PRY2, putative OS=Ricinus communis GN=RCOM_1381800 PE=4 SV=1
Gene Ontology
ID GO:0005576
description basic form of pathogenesis-related protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 041_I14.ab1: 2508-3118

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004519_010 0.0 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]
2 Hb_001019_210 0.0744295554 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
3 Hb_000215_420 0.1145622108 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
4 Hb_000832_250 0.1178921864 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
5 Hb_079394_010 0.1256667102 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
6 Hb_106321_010 0.1396958348 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
7 Hb_000844_090 0.1444031021 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
8 Hb_005333_210 0.1523414202 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
9 Hb_001004_130 0.1565820329 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
10 Hb_000566_110 0.1621517029 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
11 Hb_001005_210 0.1632114087 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
12 Hb_123560_020 0.1679426479 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
13 Hb_000484_040 0.1684177476 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
14 Hb_011440_010 0.1755963162 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
15 Hb_005168_030 0.1789524242 - - unknown [Zea mays]
16 Hb_000101_370 0.1862790143 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
17 Hb_000336_280 0.1889199295 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
18 Hb_000705_090 0.1925313978 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
19 Hb_001366_050 0.1927772596 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 [Populus euphratica]
20 Hb_024948_010 0.1930422919 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]

Gene co-expression network

sample Hb_004519_010 Hb_004519_010 Hb_001019_210 Hb_001019_210 Hb_004519_010--Hb_001019_210 Hb_000215_420 Hb_000215_420 Hb_004519_010--Hb_000215_420 Hb_000832_250 Hb_000832_250 Hb_004519_010--Hb_000832_250 Hb_079394_010 Hb_079394_010 Hb_004519_010--Hb_079394_010 Hb_106321_010 Hb_106321_010 Hb_004519_010--Hb_106321_010 Hb_000844_090 Hb_000844_090 Hb_004519_010--Hb_000844_090 Hb_001019_210--Hb_000832_250 Hb_001019_210--Hb_000215_420 Hb_001019_210--Hb_079394_010 Hb_001019_210--Hb_106321_010 Hb_000566_110 Hb_000566_110 Hb_001019_210--Hb_000566_110 Hb_000215_420--Hb_106321_010 Hb_000101_370 Hb_000101_370 Hb_000215_420--Hb_000101_370 Hb_000705_100 Hb_000705_100 Hb_000215_420--Hb_000705_100 Hb_000705_090 Hb_000705_090 Hb_000215_420--Hb_000705_090 Hb_000832_250--Hb_079394_010 Hb_024948_010 Hb_024948_010 Hb_000832_250--Hb_024948_010 Hb_000832_250--Hb_000215_420 Hb_000832_250--Hb_000101_370 Hb_001004_130 Hb_001004_130 Hb_079394_010--Hb_001004_130 Hb_005333_210 Hb_005333_210 Hb_079394_010--Hb_005333_210 Hb_008376_020 Hb_008376_020 Hb_079394_010--Hb_008376_020 Hb_004709_030 Hb_004709_030 Hb_079394_010--Hb_004709_030 Hb_005168_030 Hb_005168_030 Hb_106321_010--Hb_005168_030 Hb_123560_020 Hb_123560_020 Hb_106321_010--Hb_123560_020 Hb_106321_010--Hb_000705_090 Hb_011440_010 Hb_011440_010 Hb_106321_010--Hb_011440_010 Hb_002003_030 Hb_002003_030 Hb_106321_010--Hb_002003_030 Hb_000844_090--Hb_001004_130 Hb_001300_140 Hb_001300_140 Hb_000844_090--Hb_001300_140 Hb_000844_090--Hb_011440_010 Hb_001005_210 Hb_001005_210 Hb_000844_090--Hb_001005_210 Hb_000844_090--Hb_005333_210 Hb_004586_110 Hb_004586_110 Hb_000844_090--Hb_004586_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0618534 1.28319 58.9547 8.46075 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 96.5962 28.4668

CAGE analysis