Hb_001019_210

Information

Type -
Description -
Location Contig1019: 268463-270306
Sequence    

Annotation

kegg
ID tcc:TCM_038023
description AGC
nr
ID XP_012447344.1
description PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
swissprot
ID Q64FQ2
description Protein kinase PINOID 2 OS=Arabidopsis thaliana GN=PID2 PE=1 SV=1
trembl
ID A0A0D2UES4
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G019600 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein kinase pinoid 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00946: 268546-268717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_210 0.0 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
2 Hb_004519_010 0.0744295554 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]
3 Hb_000832_250 0.1248093659 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
4 Hb_000215_420 0.1373170499 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
5 Hb_079394_010 0.1660578178 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
6 Hb_106321_010 0.1823865896 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
7 Hb_000566_110 0.1835330025 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
8 Hb_000484_040 0.1939871874 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
9 Hb_177772_010 0.1942089621 - - PREDICTED: receptor-like protein 12 isoform X2 [Vitis vinifera]
10 Hb_000844_090 0.194702864 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
11 Hb_024948_010 0.1948010083 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
12 Hb_001005_210 0.1976517978 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
13 Hb_000101_370 0.1995263504 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
14 Hb_005333_210 0.2041305255 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
15 Hb_001004_130 0.2044154089 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
16 Hb_123560_020 0.2129157924 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
17 Hb_002989_030 0.2149857204 - - PREDICTED: protein GAST1-like [Populus euphratica]
18 Hb_000705_090 0.2159546722 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
19 Hb_000230_020 0.2181381644 - - cysteine synthase, putative [Ricinus communis]
20 Hb_164300_010 0.2195125962 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]

Gene co-expression network

sample Hb_001019_210 Hb_001019_210 Hb_004519_010 Hb_004519_010 Hb_001019_210--Hb_004519_010 Hb_000832_250 Hb_000832_250 Hb_001019_210--Hb_000832_250 Hb_000215_420 Hb_000215_420 Hb_001019_210--Hb_000215_420 Hb_079394_010 Hb_079394_010 Hb_001019_210--Hb_079394_010 Hb_106321_010 Hb_106321_010 Hb_001019_210--Hb_106321_010 Hb_000566_110 Hb_000566_110 Hb_001019_210--Hb_000566_110 Hb_004519_010--Hb_000215_420 Hb_004519_010--Hb_000832_250 Hb_004519_010--Hb_079394_010 Hb_004519_010--Hb_106321_010 Hb_000844_090 Hb_000844_090 Hb_004519_010--Hb_000844_090 Hb_000832_250--Hb_079394_010 Hb_024948_010 Hb_024948_010 Hb_000832_250--Hb_024948_010 Hb_000832_250--Hb_000215_420 Hb_000101_370 Hb_000101_370 Hb_000832_250--Hb_000101_370 Hb_000215_420--Hb_106321_010 Hb_000215_420--Hb_000101_370 Hb_000705_100 Hb_000705_100 Hb_000215_420--Hb_000705_100 Hb_000705_090 Hb_000705_090 Hb_000215_420--Hb_000705_090 Hb_001004_130 Hb_001004_130 Hb_079394_010--Hb_001004_130 Hb_005333_210 Hb_005333_210 Hb_079394_010--Hb_005333_210 Hb_008376_020 Hb_008376_020 Hb_079394_010--Hb_008376_020 Hb_004709_030 Hb_004709_030 Hb_079394_010--Hb_004709_030 Hb_005168_030 Hb_005168_030 Hb_106321_010--Hb_005168_030 Hb_123560_020 Hb_123560_020 Hb_106321_010--Hb_123560_020 Hb_106321_010--Hb_000705_090 Hb_011440_010 Hb_011440_010 Hb_106321_010--Hb_011440_010 Hb_002003_030 Hb_002003_030 Hb_106321_010--Hb_002003_030 Hb_001005_210 Hb_001005_210 Hb_000566_110--Hb_001005_210 Hb_000075_030 Hb_000075_030 Hb_000566_110--Hb_000075_030 Hb_000566_110--Hb_001004_130 Hb_000566_110--Hb_106321_010 Hb_009296_060 Hb_009296_060 Hb_000566_110--Hb_009296_060 Hb_000566_110--Hb_000215_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.5833 0.356624 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0221246 0 5.59239 1.48653

CAGE analysis