Hb_000101_370

Information

Type -
Description -
Location Contig101: 342300-344391
Sequence    

Annotation

kegg
ID pop:POPTR_0006s02780g
description POPTRDRAFT_1080270; hypothetical protein
nr
ID XP_012087637.1
description PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
swissprot
ID P36591
description Dihydrofolate reductase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dfr1 PE=2 SV=2
trembl
ID B9HDR4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02780g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00595: 342453-344241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_370 0.0 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
2 Hb_164300_010 0.1098562486 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
3 Hb_000215_420 0.1145596765 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
4 Hb_001377_480 0.1253713117 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
5 Hb_027242_010 0.1351954997 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
6 Hb_002081_220 0.1384772079 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
7 Hb_006573_260 0.1389862244 - - -
8 Hb_001102_060 0.1461509215 - - PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 isoform X1 [Jatropha curcas]
9 Hb_001101_020 0.1466940531 - - hypothetical protein RCOM_0615680 [Ricinus communis]
10 Hb_187211_010 0.1486252562 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
11 Hb_000625_130 0.1531167126 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
12 Hb_000705_090 0.1536627653 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
13 Hb_028927_010 0.1553345978 - - leucine-rich repeat protein, putative [Ricinus communis]
14 Hb_106321_010 0.1562140597 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
15 Hb_010053_010 0.1583751871 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
16 Hb_000566_110 0.1589416993 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
17 Hb_000075_030 0.1593305429 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
18 Hb_000832_250 0.1615191043 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
19 Hb_116469_010 0.1639075062 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
20 Hb_000057_210 0.1644195733 - - hypothetical protein JCGZ_06274 [Jatropha curcas]

Gene co-expression network

sample Hb_000101_370 Hb_000101_370 Hb_164300_010 Hb_164300_010 Hb_000101_370--Hb_164300_010 Hb_000215_420 Hb_000215_420 Hb_000101_370--Hb_000215_420 Hb_001377_480 Hb_001377_480 Hb_000101_370--Hb_001377_480 Hb_027242_010 Hb_027242_010 Hb_000101_370--Hb_027242_010 Hb_002081_220 Hb_002081_220 Hb_000101_370--Hb_002081_220 Hb_006573_260 Hb_006573_260 Hb_000101_370--Hb_006573_260 Hb_164300_010--Hb_002081_220 Hb_010053_010 Hb_010053_010 Hb_164300_010--Hb_010053_010 Hb_000705_090 Hb_000705_090 Hb_164300_010--Hb_000705_090 Hb_164300_010--Hb_000215_420 Hb_024948_010 Hb_024948_010 Hb_164300_010--Hb_024948_010 Hb_106321_010 Hb_106321_010 Hb_000215_420--Hb_106321_010 Hb_004519_010 Hb_004519_010 Hb_000215_420--Hb_004519_010 Hb_000705_100 Hb_000705_100 Hb_000215_420--Hb_000705_100 Hb_000215_420--Hb_000705_090 Hb_001019_210 Hb_001019_210 Hb_000215_420--Hb_001019_210 Hb_187211_010 Hb_187211_010 Hb_001377_480--Hb_187211_010 Hb_111985_120 Hb_111985_120 Hb_001377_480--Hb_111985_120 Hb_000625_130 Hb_000625_130 Hb_001377_480--Hb_000625_130 Hb_001789_010 Hb_001789_010 Hb_001377_480--Hb_001789_010 Hb_001101_020 Hb_001101_020 Hb_001377_480--Hb_001101_020 Hb_142522_030 Hb_142522_030 Hb_001377_480--Hb_142522_030 Hb_003480_010 Hb_003480_010 Hb_027242_010--Hb_003480_010 Hb_001102_060 Hb_001102_060 Hb_027242_010--Hb_001102_060 Hb_178252_010 Hb_178252_010 Hb_027242_010--Hb_178252_010 Hb_000057_210 Hb_000057_210 Hb_027242_010--Hb_000057_210 Hb_069151_010 Hb_069151_010 Hb_027242_010--Hb_069151_010 Hb_002081_220--Hb_010053_010 Hb_021888_010 Hb_021888_010 Hb_002081_220--Hb_021888_010 Hb_001532_060 Hb_001532_060 Hb_002081_220--Hb_001532_060 Hb_001158_110 Hb_001158_110 Hb_002081_220--Hb_001158_110 Hb_028927_010 Hb_028927_010 Hb_006573_260--Hb_028927_010 Hb_000057_180 Hb_000057_180 Hb_006573_260--Hb_000057_180 Hb_006573_260--Hb_021888_010 Hb_002003_030 Hb_002003_030 Hb_006573_260--Hb_002003_030 Hb_116469_010 Hb_116469_010 Hb_006573_260--Hb_116469_010 Hb_006573_260--Hb_106321_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0353782 1.38935 30.6376 7.03078 0.0295226 0.016156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10784 0.0282783 0 54.1198 3.11834

CAGE analysis