Hb_010053_010

Information

Type -
Description -
Location Contig10053: 1736-3543
Sequence    

Annotation

kegg
ID pop:POPTR_0002s12790g
description hypothetical protein
nr
ID XP_006387871.1
description hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
swissprot
ID P17859
description Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1
trembl
ID U7DUZ5
description Alpha-amylase OS=Populus trichocarpa GN=POPTR_0515s00220g PE=3 SV=1
Gene Ontology
ID GO:0004556
description alpha amylase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00363: 1656-3226 , PASA_asmbl_00364: 3286-3527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010053_010 0.0 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
2 Hb_000128_050 0.1108176593 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002081_220 0.1130609166 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
4 Hb_000552_030 0.1192598192 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
5 Hb_024948_010 0.125839668 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
6 Hb_164300_010 0.1346991791 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
7 Hb_002081_190 0.1350116861 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
8 Hb_027242_010 0.1423965762 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
9 Hb_173764_010 0.1474067273 - - protein binding protein, putative [Ricinus communis]
10 Hb_003119_120 0.1550024169 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
11 Hb_000101_370 0.1583751871 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
12 Hb_001102_060 0.1595076653 - - PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 isoform X1 [Jatropha curcas]
13 Hb_021888_010 0.1609171284 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
14 Hb_027028_010 0.1653114208 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
15 Hb_000431_140 0.1724532105 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
16 Hb_000679_280 0.1733338803 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
17 Hb_030736_030 0.1747365105 - - hypothetical protein VITISV_006651 [Vitis vinifera]
18 Hb_002498_290 0.1825577793 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
19 Hb_003549_010 0.1845778256 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
20 Hb_006573_260 0.187400041 - - -

Gene co-expression network

sample Hb_010053_010 Hb_010053_010 Hb_000128_050 Hb_000128_050 Hb_010053_010--Hb_000128_050 Hb_002081_220 Hb_002081_220 Hb_010053_010--Hb_002081_220 Hb_000552_030 Hb_000552_030 Hb_010053_010--Hb_000552_030 Hb_024948_010 Hb_024948_010 Hb_010053_010--Hb_024948_010 Hb_164300_010 Hb_164300_010 Hb_010053_010--Hb_164300_010 Hb_002081_190 Hb_002081_190 Hb_010053_010--Hb_002081_190 Hb_000128_050--Hb_002081_190 Hb_173764_010 Hb_173764_010 Hb_000128_050--Hb_173764_010 Hb_000128_050--Hb_000552_030 Hb_000343_220 Hb_000343_220 Hb_000128_050--Hb_000343_220 Hb_001366_380 Hb_001366_380 Hb_000128_050--Hb_001366_380 Hb_002081_220--Hb_164300_010 Hb_021888_010 Hb_021888_010 Hb_002081_220--Hb_021888_010 Hb_001532_060 Hb_001532_060 Hb_002081_220--Hb_001532_060 Hb_000101_370 Hb_000101_370 Hb_002081_220--Hb_000101_370 Hb_001158_110 Hb_001158_110 Hb_002081_220--Hb_001158_110 Hb_000552_030--Hb_173764_010 Hb_000552_030--Hb_002081_190 Hb_003549_010 Hb_003549_010 Hb_000552_030--Hb_003549_010 Hb_027028_010 Hb_027028_010 Hb_000552_030--Hb_027028_010 Hb_000431_140 Hb_000431_140 Hb_024948_010--Hb_000431_140 Hb_024948_010--Hb_000128_050 Hb_024948_010--Hb_164300_010 Hb_000832_250 Hb_000832_250 Hb_024948_010--Hb_000832_250 Hb_024948_010--Hb_000552_030 Hb_164300_010--Hb_000101_370 Hb_000705_090 Hb_000705_090 Hb_164300_010--Hb_000705_090 Hb_000215_420 Hb_000215_420 Hb_164300_010--Hb_000215_420 Hb_002081_190--Hb_000343_220 Hb_002081_190--Hb_173764_010 Hb_002081_190--Hb_001366_380 Hb_002498_290 Hb_002498_290 Hb_002081_190--Hb_002498_290 Hb_000272_010 Hb_000272_010 Hb_002081_190--Hb_000272_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0629126 5.18842 1.5818 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0332719 0 0.0490709 4.95625 0.327779

CAGE analysis