Hb_000128_050

Information

Type -
Description -
Location Contig128: 87592-89189
Sequence    

Annotation

kegg
ID rcu:RCOM_0510210
description hypothetical protein
nr
ID XP_002532508.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T2N9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0510210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08665: 87621-87929 , PASA_asmbl_08666: 87933-88529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000128_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002081_190 0.0442112187 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
3 Hb_173764_010 0.0945921724 - - protein binding protein, putative [Ricinus communis]
4 Hb_000552_030 0.1041572874 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
5 Hb_000343_220 0.1106425305 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]
6 Hb_010053_010 0.1108176593 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
7 Hb_001366_380 0.1217394372 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
8 Hb_000679_280 0.1375959464 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
9 Hb_002498_290 0.1399782407 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
10 Hb_000272_010 0.1408210644 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
11 Hb_003549_010 0.1436293955 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
12 Hb_030736_030 0.146655883 - - hypothetical protein VITISV_006651 [Vitis vinifera]
13 Hb_024948_010 0.1481777289 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
14 Hb_006316_090 0.1529546752 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_001369_550 0.1611165354 - - 21 kDa protein precursor, putative [Ricinus communis]
16 Hb_002081_220 0.1618309621 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
17 Hb_001252_050 0.162544439 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
18 Hb_006711_040 0.1633690493 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
19 Hb_002559_010 0.1636995037 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
20 Hb_002217_060 0.1646742362 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]

Gene co-expression network

sample Hb_000128_050 Hb_000128_050 Hb_002081_190 Hb_002081_190 Hb_000128_050--Hb_002081_190 Hb_173764_010 Hb_173764_010 Hb_000128_050--Hb_173764_010 Hb_000552_030 Hb_000552_030 Hb_000128_050--Hb_000552_030 Hb_000343_220 Hb_000343_220 Hb_000128_050--Hb_000343_220 Hb_010053_010 Hb_010053_010 Hb_000128_050--Hb_010053_010 Hb_001366_380 Hb_001366_380 Hb_000128_050--Hb_001366_380 Hb_002081_190--Hb_000343_220 Hb_002081_190--Hb_173764_010 Hb_002081_190--Hb_001366_380 Hb_002498_290 Hb_002498_290 Hb_002081_190--Hb_002498_290 Hb_000272_010 Hb_000272_010 Hb_002081_190--Hb_000272_010 Hb_173764_010--Hb_000552_030 Hb_003549_010 Hb_003549_010 Hb_173764_010--Hb_003549_010 Hb_000679_280 Hb_000679_280 Hb_173764_010--Hb_000679_280 Hb_173764_010--Hb_002498_290 Hb_000552_030--Hb_010053_010 Hb_000552_030--Hb_002081_190 Hb_000552_030--Hb_003549_010 Hb_027028_010 Hb_027028_010 Hb_000552_030--Hb_027028_010 Hb_001252_050 Hb_001252_050 Hb_000343_220--Hb_001252_050 Hb_006711_040 Hb_006711_040 Hb_000343_220--Hb_006711_040 Hb_000490_040 Hb_000490_040 Hb_000343_220--Hb_000490_040 Hb_000343_220--Hb_000272_010 Hb_002081_220 Hb_002081_220 Hb_010053_010--Hb_002081_220 Hb_024948_010 Hb_024948_010 Hb_010053_010--Hb_024948_010 Hb_164300_010 Hb_164300_010 Hb_010053_010--Hb_164300_010 Hb_010053_010--Hb_002081_190 Hb_001366_380--Hb_000272_010 Hb_000260_670 Hb_000260_670 Hb_001366_380--Hb_000260_670 Hb_006316_090 Hb_006316_090 Hb_001366_380--Hb_006316_090 Hb_005306_030 Hb_005306_030 Hb_001366_380--Hb_005306_030 Hb_001649_050 Hb_001649_050 Hb_001366_380--Hb_001649_050 Hb_001076_010 Hb_001076_010 Hb_001366_380--Hb_001076_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.125651 7.6637 3.06542 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.15336 0.48845

CAGE analysis