Hb_003549_010

Information

Type -
Description -
Location Contig3549: 30280-31025
Sequence    

Annotation

kegg
ID rcu:RCOM_1435510
description hypothetical protein
nr
ID XP_012088910.1
description PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JV26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23232 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_010 0.0 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
2 Hb_000679_280 0.037339964 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
3 Hb_002498_290 0.0528799949 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
4 Hb_030736_030 0.0955508285 - - hypothetical protein VITISV_006651 [Vitis vinifera]
5 Hb_173764_010 0.1024496372 - - protein binding protein, putative [Ricinus communis]
6 Hb_027028_010 0.1129977554 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
7 Hb_003119_120 0.1255974701 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
8 Hb_000552_030 0.1320398752 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
9 Hb_028013_030 0.1354854676 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_036182_010 0.1364751288 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
11 Hb_000438_030 0.1388871967 - - -
12 Hb_002081_190 0.1400274228 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
13 Hb_000128_050 0.1436293955 - - conserved hypothetical protein [Ricinus communis]
14 Hb_151094_020 0.1460696755 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
15 Hb_001890_040 0.1497863503 - - receptor-kinase, putative [Ricinus communis]
16 Hb_147060_010 0.1576415906 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
17 Hb_010812_130 0.1608292381 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
18 Hb_135673_010 0.1623892515 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
19 Hb_001006_050 0.1634108944 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
20 Hb_000621_100 0.1651215412 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003549_010 Hb_003549_010 Hb_000679_280 Hb_000679_280 Hb_003549_010--Hb_000679_280 Hb_002498_290 Hb_002498_290 Hb_003549_010--Hb_002498_290 Hb_030736_030 Hb_030736_030 Hb_003549_010--Hb_030736_030 Hb_173764_010 Hb_173764_010 Hb_003549_010--Hb_173764_010 Hb_027028_010 Hb_027028_010 Hb_003549_010--Hb_027028_010 Hb_003119_120 Hb_003119_120 Hb_003549_010--Hb_003119_120 Hb_000679_280--Hb_002498_290 Hb_000679_280--Hb_030736_030 Hb_000679_280--Hb_173764_010 Hb_000679_280--Hb_027028_010 Hb_151094_020 Hb_151094_020 Hb_000679_280--Hb_151094_020 Hb_002498_290--Hb_030736_030 Hb_002498_290--Hb_151094_020 Hb_135673_010 Hb_135673_010 Hb_002498_290--Hb_135673_010 Hb_001006_050 Hb_001006_050 Hb_002498_290--Hb_001006_050 Hb_030736_030--Hb_151094_020 Hb_030736_030--Hb_135673_010 Hb_030736_030--Hb_001006_050 Hb_000552_030 Hb_000552_030 Hb_173764_010--Hb_000552_030 Hb_000128_050 Hb_000128_050 Hb_173764_010--Hb_000128_050 Hb_002081_190 Hb_002081_190 Hb_173764_010--Hb_002081_190 Hb_173764_010--Hb_002498_290 Hb_027028_010--Hb_003119_120 Hb_002805_260 Hb_002805_260 Hb_027028_010--Hb_002805_260 Hb_027028_010--Hb_000552_030 Hb_027028_010--Hb_173764_010 Hb_003119_120--Hb_000679_280 Hb_000057_210 Hb_000057_210 Hb_003119_120--Hb_000057_210 Hb_003119_120--Hb_000552_030 Hb_003119_120--Hb_173764_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.352463 0.119979 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.190721 0

CAGE analysis