Hb_030736_030

Information

Type -
Description -
Location Contig30736: 18108-19628
Sequence    

Annotation

kegg
ID vvi:100248801
description uncharacterized LOC100248801
nr
ID CAN67424.1
description hypothetical protein VITISV_006651 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B200
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006651 PE=4 SV=1
Gene Ontology
ID GO:0006950
description adenine nucleotide alpha hydrolases-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32468: 17924-19584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030736_030 0.0 - - hypothetical protein VITISV_006651 [Vitis vinifera]
2 Hb_002498_290 0.0735934389 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
3 Hb_000679_280 0.0794931087 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
4 Hb_003549_010 0.0955508285 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
5 Hb_151094_020 0.1203987181 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
6 Hb_135673_010 0.1244818099 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
7 Hb_001006_050 0.1262449874 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
8 Hb_002081_190 0.128273242 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
9 Hb_000438_030 0.1309266008 - - -
10 Hb_173764_010 0.1318404044 - - protein binding protein, putative [Ricinus communis]
11 Hb_103452_010 0.1353479128 - - hypothetical protein VITISV_027174 [Vitis vinifera]
12 Hb_147060_010 0.1431848397 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
13 Hb_005356_030 0.1455836285 - - protein binding protein, putative [Ricinus communis]
14 Hb_010812_130 0.1459686828 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
15 Hb_000128_050 0.146655883 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000552_030 0.1479417176 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
17 Hb_001862_160 0.1538111664 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
18 Hb_046615_040 0.167943496 - - unnamed protein product [Vitis vinifera]
19 Hb_027028_010 0.1693750778 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
20 Hb_003119_120 0.171163788 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_030736_030 Hb_030736_030 Hb_002498_290 Hb_002498_290 Hb_030736_030--Hb_002498_290 Hb_000679_280 Hb_000679_280 Hb_030736_030--Hb_000679_280 Hb_003549_010 Hb_003549_010 Hb_030736_030--Hb_003549_010 Hb_151094_020 Hb_151094_020 Hb_030736_030--Hb_151094_020 Hb_135673_010 Hb_135673_010 Hb_030736_030--Hb_135673_010 Hb_001006_050 Hb_001006_050 Hb_030736_030--Hb_001006_050 Hb_002498_290--Hb_000679_280 Hb_002498_290--Hb_003549_010 Hb_002498_290--Hb_151094_020 Hb_002498_290--Hb_135673_010 Hb_002498_290--Hb_001006_050 Hb_000679_280--Hb_003549_010 Hb_173764_010 Hb_173764_010 Hb_000679_280--Hb_173764_010 Hb_027028_010 Hb_027028_010 Hb_000679_280--Hb_027028_010 Hb_000679_280--Hb_151094_020 Hb_003549_010--Hb_173764_010 Hb_003549_010--Hb_027028_010 Hb_003119_120 Hb_003119_120 Hb_003549_010--Hb_003119_120 Hb_147060_010 Hb_147060_010 Hb_151094_020--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_151094_020--Hb_010812_130 Hb_151094_020--Hb_001006_050 Hb_000438_030 Hb_000438_030 Hb_151094_020--Hb_000438_030 Hb_151094_020--Hb_135673_010 Hb_103452_010 Hb_103452_010 Hb_151094_020--Hb_103452_010 Hb_135673_010--Hb_103452_010 Hb_135673_010--Hb_001006_050 Hb_005356_030 Hb_005356_030 Hb_135673_010--Hb_005356_030 Hb_004116_090 Hb_004116_090 Hb_135673_010--Hb_004116_090 Hb_001006_050--Hb_103452_010 Hb_001006_050--Hb_005356_030 Hb_001006_050--Hb_004116_090 Hb_001006_050--Hb_147060_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0265832 5.60173 2.7374 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.103146 3.74452 0

CAGE analysis