Hb_003119_120

Information

Type -
Description -
Location Contig3119: 81948-83033
Sequence    

Annotation

kegg
ID mtr:MTR_097s0020
description 1-aminocyclopropane-1-carboxylate oxidase-like protein
nr
ID XP_009799787.1
description PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
swissprot
ID Q9ZTA3
description Probable 2-oxoglutarate-dependent dioxygenase AOP1 OS=Arabidopsis thaliana GN=AOP1 PE=2 SV=1
trembl
ID M1AGH4
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008650 PE=4 SV=1
Gene Ontology
ID GO:0016706
description feruloyl ortho-hydroxylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003119_120 0.0 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
2 Hb_027028_010 0.0296237306 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
3 Hb_003549_010 0.1255974701 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
4 Hb_000679_280 0.1269349358 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
5 Hb_000057_210 0.1317196455 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
6 Hb_000552_030 0.1463521072 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
7 Hb_173764_010 0.1472987308 - - protein binding protein, putative [Ricinus communis]
8 Hb_002498_290 0.1480650122 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
9 Hb_002805_260 0.1481422321 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010053_010 0.1550024169 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
11 Hb_002081_220 0.1570065106 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
12 Hb_000431_140 0.1642777652 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
13 Hb_028013_030 0.1710978052 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_030736_030 0.171163788 - - hypothetical protein VITISV_006651 [Vitis vinifera]
15 Hb_000128_050 0.1825469993 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003480_010 0.1827021424 - - cytochrome P450 family protein [Populus trichocarpa]
17 Hb_001890_040 0.195105278 - - receptor-kinase, putative [Ricinus communis]
18 Hb_027242_010 0.1952370044 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
19 Hb_002081_190 0.198286438 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
20 Hb_024948_010 0.2017189669 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]

Gene co-expression network

sample Hb_003119_120 Hb_003119_120 Hb_027028_010 Hb_027028_010 Hb_003119_120--Hb_027028_010 Hb_003549_010 Hb_003549_010 Hb_003119_120--Hb_003549_010 Hb_000679_280 Hb_000679_280 Hb_003119_120--Hb_000679_280 Hb_000057_210 Hb_000057_210 Hb_003119_120--Hb_000057_210 Hb_000552_030 Hb_000552_030 Hb_003119_120--Hb_000552_030 Hb_173764_010 Hb_173764_010 Hb_003119_120--Hb_173764_010 Hb_027028_010--Hb_003549_010 Hb_027028_010--Hb_000679_280 Hb_002805_260 Hb_002805_260 Hb_027028_010--Hb_002805_260 Hb_027028_010--Hb_000552_030 Hb_027028_010--Hb_173764_010 Hb_003549_010--Hb_000679_280 Hb_002498_290 Hb_002498_290 Hb_003549_010--Hb_002498_290 Hb_030736_030 Hb_030736_030 Hb_003549_010--Hb_030736_030 Hb_003549_010--Hb_173764_010 Hb_000679_280--Hb_002498_290 Hb_000679_280--Hb_030736_030 Hb_000679_280--Hb_173764_010 Hb_151094_020 Hb_151094_020 Hb_000679_280--Hb_151094_020 Hb_003480_010 Hb_003480_010 Hb_000057_210--Hb_003480_010 Hb_140049_060 Hb_140049_060 Hb_000057_210--Hb_140049_060 Hb_027242_010 Hb_027242_010 Hb_000057_210--Hb_027242_010 Hb_187211_010 Hb_187211_010 Hb_000057_210--Hb_187211_010 Hb_000057_210--Hb_027028_010 Hb_000552_030--Hb_173764_010 Hb_000128_050 Hb_000128_050 Hb_000552_030--Hb_000128_050 Hb_010053_010 Hb_010053_010 Hb_000552_030--Hb_010053_010 Hb_002081_190 Hb_002081_190 Hb_000552_030--Hb_002081_190 Hb_000552_030--Hb_003549_010 Hb_173764_010--Hb_000128_050 Hb_173764_010--Hb_002081_190 Hb_173764_010--Hb_002498_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.309253 0.0582199 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.23927 0

CAGE analysis