Hb_002498_290

Information

Type -
Description -
Location Contig2498: 174175-179601
Sequence    

Annotation

kegg
ID pda:103697397
description autophagy-related protein 8C
nr
ID XP_010923850.1
description PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
swissprot
ID Q6Z1D5
description Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1
trembl
ID D7T7Z0
description Autophagy-related protein OS=Vitis vinifera GN=VIT_19s0090g00580 PE=3 SV=1
Gene Ontology
ID GO:0000421
description autophagy-related protein 8c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_290 0.0 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
2 Hb_000679_280 0.0227487994 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
3 Hb_003549_010 0.0528799949 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
4 Hb_030736_030 0.0735934389 - - hypothetical protein VITISV_006651 [Vitis vinifera]
5 Hb_151094_020 0.1039360662 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
6 Hb_135673_010 0.1101366163 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
7 Hb_001006_050 0.1124378969 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
8 Hb_000438_030 0.1137303609 - - -
9 Hb_173764_010 0.1222805279 - - protein binding protein, putative [Ricinus communis]
10 Hb_103452_010 0.1233745309 - - hypothetical protein VITISV_027174 [Vitis vinifera]
11 Hb_002081_190 0.1241213721 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
12 Hb_147060_010 0.1291178614 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
13 Hb_010812_130 0.1323738676 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
14 Hb_005356_030 0.1353172851 - - protein binding protein, putative [Ricinus communis]
15 Hb_000128_050 0.1399782407 - - conserved hypothetical protein [Ricinus communis]
16 Hb_027028_010 0.1451119016 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
17 Hb_003119_120 0.1480650122 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
18 Hb_000552_030 0.1561080897 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
19 Hb_046615_040 0.1571006027 - - unnamed protein product [Vitis vinifera]
20 Hb_001862_160 0.1602041231 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_002498_290 Hb_002498_290 Hb_000679_280 Hb_000679_280 Hb_002498_290--Hb_000679_280 Hb_003549_010 Hb_003549_010 Hb_002498_290--Hb_003549_010 Hb_030736_030 Hb_030736_030 Hb_002498_290--Hb_030736_030 Hb_151094_020 Hb_151094_020 Hb_002498_290--Hb_151094_020 Hb_135673_010 Hb_135673_010 Hb_002498_290--Hb_135673_010 Hb_001006_050 Hb_001006_050 Hb_002498_290--Hb_001006_050 Hb_000679_280--Hb_003549_010 Hb_000679_280--Hb_030736_030 Hb_173764_010 Hb_173764_010 Hb_000679_280--Hb_173764_010 Hb_027028_010 Hb_027028_010 Hb_000679_280--Hb_027028_010 Hb_000679_280--Hb_151094_020 Hb_003549_010--Hb_030736_030 Hb_003549_010--Hb_173764_010 Hb_003549_010--Hb_027028_010 Hb_003119_120 Hb_003119_120 Hb_003549_010--Hb_003119_120 Hb_030736_030--Hb_151094_020 Hb_030736_030--Hb_135673_010 Hb_030736_030--Hb_001006_050 Hb_147060_010 Hb_147060_010 Hb_151094_020--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_151094_020--Hb_010812_130 Hb_151094_020--Hb_001006_050 Hb_000438_030 Hb_000438_030 Hb_151094_020--Hb_000438_030 Hb_151094_020--Hb_135673_010 Hb_103452_010 Hb_103452_010 Hb_151094_020--Hb_103452_010 Hb_135673_010--Hb_103452_010 Hb_135673_010--Hb_001006_050 Hb_005356_030 Hb_005356_030 Hb_135673_010--Hb_005356_030 Hb_004116_090 Hb_004116_090 Hb_135673_010--Hb_004116_090 Hb_001006_050--Hb_103452_010 Hb_001006_050--Hb_005356_030 Hb_001006_050--Hb_004116_090 Hb_001006_050--Hb_147060_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0924088 0.0427108 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0604199 0

CAGE analysis