Hb_173764_010

Information

Type -
Description -
Location Contig173764: 7-364
Sequence    

Annotation

kegg
ID rcu:RCOM_1711740
description protein binding protein, putative
nr
ID XP_002524159.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDU0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1711740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173764_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000552_030 0.0893344095 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
3 Hb_000128_050 0.0945921724 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002081_190 0.1013234956 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
5 Hb_003549_010 0.1024496372 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
6 Hb_000679_280 0.1122712624 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
7 Hb_002498_290 0.1222805279 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
8 Hb_001366_380 0.1224596517 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
9 Hb_030736_030 0.1318404044 - - hypothetical protein VITISV_006651 [Vitis vinifera]
10 Hb_027028_010 0.1366561269 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
11 Hb_036182_010 0.1445586565 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
12 Hb_006316_090 0.1455549879 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_003119_120 0.1472987308 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
14 Hb_010053_010 0.1474067273 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
15 Hb_002805_260 0.148813344 - - conserved hypothetical protein [Ricinus communis]
16 Hb_028013_030 0.1577806916 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002081_220 0.1611150483 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
18 Hb_000272_010 0.1688553452 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
19 Hb_001890_040 0.1710378316 - - receptor-kinase, putative [Ricinus communis]
20 Hb_000958_040 0.1727712435 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_173764_010 Hb_173764_010 Hb_000552_030 Hb_000552_030 Hb_173764_010--Hb_000552_030 Hb_000128_050 Hb_000128_050 Hb_173764_010--Hb_000128_050 Hb_002081_190 Hb_002081_190 Hb_173764_010--Hb_002081_190 Hb_003549_010 Hb_003549_010 Hb_173764_010--Hb_003549_010 Hb_000679_280 Hb_000679_280 Hb_173764_010--Hb_000679_280 Hb_002498_290 Hb_002498_290 Hb_173764_010--Hb_002498_290 Hb_000552_030--Hb_000128_050 Hb_010053_010 Hb_010053_010 Hb_000552_030--Hb_010053_010 Hb_000552_030--Hb_002081_190 Hb_000552_030--Hb_003549_010 Hb_027028_010 Hb_027028_010 Hb_000552_030--Hb_027028_010 Hb_000128_050--Hb_002081_190 Hb_000343_220 Hb_000343_220 Hb_000128_050--Hb_000343_220 Hb_000128_050--Hb_010053_010 Hb_001366_380 Hb_001366_380 Hb_000128_050--Hb_001366_380 Hb_002081_190--Hb_000343_220 Hb_002081_190--Hb_001366_380 Hb_002081_190--Hb_002498_290 Hb_000272_010 Hb_000272_010 Hb_002081_190--Hb_000272_010 Hb_003549_010--Hb_000679_280 Hb_003549_010--Hb_002498_290 Hb_030736_030 Hb_030736_030 Hb_003549_010--Hb_030736_030 Hb_003549_010--Hb_027028_010 Hb_003119_120 Hb_003119_120 Hb_003549_010--Hb_003119_120 Hb_000679_280--Hb_002498_290 Hb_000679_280--Hb_030736_030 Hb_000679_280--Hb_027028_010 Hb_151094_020 Hb_151094_020 Hb_000679_280--Hb_151094_020 Hb_002498_290--Hb_030736_030 Hb_002498_290--Hb_151094_020 Hb_135673_010 Hb_135673_010 Hb_002498_290--Hb_135673_010 Hb_001006_050 Hb_001006_050 Hb_002498_290--Hb_001006_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.408409 2.72028 141.768 42.2079 0.138906 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 76.8052 2.03619

CAGE analysis