Hb_000272_010

Information

Type -
Description -
Location Contig272: 5898-17428
Sequence    

Annotation

kegg
ID pop:POPTR_0006s20300g
description POPTRDRAFT_832008; minichromosome maintenance family protein
nr
ID XP_012071446.1
description PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
swissprot
ID O80786
description DNA replication licensing factor MCM5 OS=Arabidopsis thaliana GN=MCM5 PE=1 SV=1
trembl
ID A0A067KR63
description DNA helicase OS=Jatropha curcas GN=JCGZ_03985 PE=3 SV=1
Gene Ontology
ID GO:0005634
description minichromosome maintenance 5 partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28458: 6111-8158 , PASA_asmbl_28459: 8555-9212 , PASA_asmbl_28460: 9364-17521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000272_010 0.0 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
2 Hb_001366_380 0.0743351796 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
3 Hb_000260_670 0.0771930766 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
4 Hb_080147_070 0.0948765653 - - Rop5 [Hevea brasiliensis]
5 Hb_000535_040 0.101305502 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
6 Hb_000343_220 0.1050352389 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]
7 Hb_006711_040 0.1100176752 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
8 Hb_001369_550 0.110632307 - - 21 kDa protein precursor, putative [Ricinus communis]
9 Hb_000417_140 0.1157740757 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
10 Hb_005306_030 0.1158727244 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
11 Hb_001263_030 0.1166747521 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
12 Hb_000094_230 0.1180393096 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
13 Hb_000030_080 0.1185020663 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
14 Hb_008143_050 0.1200455174 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
15 Hb_003360_010 0.1225002243 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
16 Hb_002081_190 0.1261736814 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
17 Hb_009535_010 0.1263883299 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
18 Hb_001076_010 0.1285114852 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
19 Hb_001252_050 0.1291159532 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
20 Hb_077562_020 0.1328669369 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000272_010 Hb_000272_010 Hb_001366_380 Hb_001366_380 Hb_000272_010--Hb_001366_380 Hb_000260_670 Hb_000260_670 Hb_000272_010--Hb_000260_670 Hb_080147_070 Hb_080147_070 Hb_000272_010--Hb_080147_070 Hb_000535_040 Hb_000535_040 Hb_000272_010--Hb_000535_040 Hb_000343_220 Hb_000343_220 Hb_000272_010--Hb_000343_220 Hb_006711_040 Hb_006711_040 Hb_000272_010--Hb_006711_040 Hb_001366_380--Hb_000260_670 Hb_006316_090 Hb_006316_090 Hb_001366_380--Hb_006316_090 Hb_005306_030 Hb_005306_030 Hb_001366_380--Hb_005306_030 Hb_001649_050 Hb_001649_050 Hb_001366_380--Hb_001649_050 Hb_001076_010 Hb_001076_010 Hb_001366_380--Hb_001076_010 Hb_000260_670--Hb_080147_070 Hb_000954_040 Hb_000954_040 Hb_000260_670--Hb_000954_040 Hb_003360_010 Hb_003360_010 Hb_000260_670--Hb_003360_010 Hb_002700_030 Hb_002700_030 Hb_000260_670--Hb_002700_030 Hb_001284_070 Hb_001284_070 Hb_080147_070--Hb_001284_070 Hb_080147_070--Hb_002700_030 Hb_001369_550 Hb_001369_550 Hb_080147_070--Hb_001369_550 Hb_001310_060 Hb_001310_060 Hb_080147_070--Hb_001310_060 Hb_004607_020 Hb_004607_020 Hb_080147_070--Hb_004607_020 Hb_000094_230 Hb_000094_230 Hb_000535_040--Hb_000094_230 Hb_008143_050 Hb_008143_050 Hb_000535_040--Hb_008143_050 Hb_001782_100 Hb_001782_100 Hb_000535_040--Hb_001782_100 Hb_001263_030 Hb_001263_030 Hb_000535_040--Hb_001263_030 Hb_000979_070 Hb_000979_070 Hb_000535_040--Hb_000979_070 Hb_001252_050 Hb_001252_050 Hb_000343_220--Hb_001252_050 Hb_000343_220--Hb_006711_040 Hb_002081_190 Hb_002081_190 Hb_000343_220--Hb_002081_190 Hb_000490_040 Hb_000490_040 Hb_000343_220--Hb_000490_040 Hb_000128_050 Hb_000128_050 Hb_000343_220--Hb_000128_050 Hb_006711_040--Hb_000490_040 Hb_008143_060 Hb_008143_060 Hb_006711_040--Hb_008143_060 Hb_006711_040--Hb_001252_050 Hb_001832_140 Hb_001832_140 Hb_006711_040--Hb_001832_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0658204 0.359961 9.0985 5.33719 0.0226831 0.0552327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0269747 0 4.075 0.745858

CAGE analysis