Hb_001832_140

Information

Type -
Description -
Location Contig1832: 142547-145983
Sequence    

Annotation

kegg
ID gmx:100781403
description transmembrane 9 superfamily member 4-like
nr
ID KEH18347.1
description endomembrane protein 70 family protein [Medicago truncatula]
swissprot
ID Q9LIC2
description Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1
trembl
ID A0A072TLT0
description Endomembrane protein 70 family protein OS=Medicago truncatula GN=MTR_8g016270 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17893: 134241-141651 , PASA_asmbl_17896: 142903-143381 , PASA_asmbl_17897: 143655-145170 , PASA_asmbl_17898: 145397-145816 , PASA_asmbl_17899: 145865-146351
cDNA
(Sanger)
(ID:Location)		 051_C15.ab1: 141348-141594

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_140 0.0 - - endomembrane protein 70 family protein [Medicago truncatula]
2 Hb_000696_250 0.0942654525 - - PREDICTED: patellin-6 [Jatropha curcas]
3 Hb_001195_740 0.0956384251 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
4 Hb_008143_060 0.1003571671 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
5 Hb_006711_040 0.1088053009 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
6 Hb_001252_050 0.1185757054 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
7 Hb_000465_130 0.1190512365 transcription factor TF Family: ERF hypothetical protein POPTR_0001s15550g [Populus trichocarpa]
8 Hb_002918_120 0.1235497749 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_004846_080 0.1325315836 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
10 Hb_000018_120 0.1360944803 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_000343_220 0.1391061027 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]
12 Hb_001157_190 0.139379041 - - PREDICTED: protein YLS3 [Jatropha curcas]
13 Hb_004446_060 0.1436738949 - - neutral/alkaline invertase [Manihot esculenta]
14 Hb_001832_110 0.1437456179 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
15 Hb_000749_120 0.1447059426 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
16 Hb_005731_070 0.147504322 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001252_070 0.1498635641 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
18 Hb_000941_010 0.149866849 - - hypothetical protein RCOM_0504460 [Ricinus communis]
19 Hb_005168_020 0.1528196671 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
20 Hb_000696_030 0.15473468 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001832_140 Hb_001832_140 Hb_000696_250 Hb_000696_250 Hb_001832_140--Hb_000696_250 Hb_001195_740 Hb_001195_740 Hb_001832_140--Hb_001195_740 Hb_008143_060 Hb_008143_060 Hb_001832_140--Hb_008143_060 Hb_006711_040 Hb_006711_040 Hb_001832_140--Hb_006711_040 Hb_001252_050 Hb_001252_050 Hb_001832_140--Hb_001252_050 Hb_000465_130 Hb_000465_130 Hb_001832_140--Hb_000465_130 Hb_000018_120 Hb_000018_120 Hb_000696_250--Hb_000018_120 Hb_000696_250--Hb_001252_050 Hb_001349_020 Hb_001349_020 Hb_000696_250--Hb_001349_020 Hb_009767_030 Hb_009767_030 Hb_000696_250--Hb_009767_030 Hb_022092_050 Hb_022092_050 Hb_000696_250--Hb_022092_050 Hb_001157_190 Hb_001157_190 Hb_001195_740--Hb_001157_190 Hb_001195_740--Hb_008143_060 Hb_002918_120 Hb_002918_120 Hb_001195_740--Hb_002918_120 Hb_001195_740--Hb_000696_250 Hb_000696_030 Hb_000696_030 Hb_001195_740--Hb_000696_030 Hb_008143_060--Hb_006711_040 Hb_008143_060--Hb_001252_050 Hb_008143_060--Hb_000696_250 Hb_008143_060--Hb_000465_130 Hb_000343_220 Hb_000343_220 Hb_006711_040--Hb_000343_220 Hb_000490_040 Hb_000490_040 Hb_006711_040--Hb_000490_040 Hb_006711_040--Hb_001252_050 Hb_000272_010 Hb_000272_010 Hb_006711_040--Hb_000272_010 Hb_001252_050--Hb_000343_220 Hb_008143_050 Hb_008143_050 Hb_001252_050--Hb_008143_050 Hb_000417_140 Hb_000417_140 Hb_001252_050--Hb_000417_140 Hb_004846_080 Hb_004846_080 Hb_000465_130--Hb_004846_080 Hb_000465_130--Hb_001195_740 Hb_001776_070 Hb_001776_070 Hb_000465_130--Hb_001776_070 Hb_000465_130--Hb_001252_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0103052 0.292949 2.78554 2.06518 0.00964765 0.093925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0468518 0 0 2.45737 0.778283

CAGE analysis