Hb_000343_220

Information

Type -
Description -
Location Contig343: 184571-186630
Sequence    

Annotation

kegg
ID cic:CICLE_v10027058mg
description hypothetical protein
nr
ID KDO48842.1
description hypothetical protein CISIN_1g037489mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067ECA0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037489mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_220 0.0 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]
2 Hb_001252_050 0.0835976578 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
3 Hb_006711_040 0.0912370326 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
4 Hb_002081_190 0.0947268266 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
5 Hb_000490_040 0.1049804388 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
6 Hb_000272_010 0.1050352389 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
7 Hb_000128_050 0.1106425305 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008143_060 0.1251864833 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
9 Hb_007382_080 0.1258234925 - - glutaredoxin, grx, putative [Ricinus communis]
10 Hb_000696_250 0.1259675007 - - PREDICTED: patellin-6 [Jatropha curcas]
11 Hb_009535_010 0.1294809556 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
12 Hb_000535_040 0.1298911231 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
13 Hb_002559_010 0.1303181553 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
14 Hb_001366_380 0.1362679236 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
15 Hb_008143_050 0.1389703207 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
16 Hb_001832_140 0.1391061027 - - endomembrane protein 70 family protein [Medicago truncatula]
17 Hb_080147_070 0.1411135285 - - Rop5 [Hevea brasiliensis]
18 Hb_000260_670 0.1415396777 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
19 Hb_000417_140 0.1452344413 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
20 Hb_017358_050 0.1485355208 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]

Gene co-expression network

sample Hb_000343_220 Hb_000343_220 Hb_001252_050 Hb_001252_050 Hb_000343_220--Hb_001252_050 Hb_006711_040 Hb_006711_040 Hb_000343_220--Hb_006711_040 Hb_002081_190 Hb_002081_190 Hb_000343_220--Hb_002081_190 Hb_000490_040 Hb_000490_040 Hb_000343_220--Hb_000490_040 Hb_000272_010 Hb_000272_010 Hb_000343_220--Hb_000272_010 Hb_000128_050 Hb_000128_050 Hb_000343_220--Hb_000128_050 Hb_008143_050 Hb_008143_050 Hb_001252_050--Hb_008143_050 Hb_000696_250 Hb_000696_250 Hb_001252_050--Hb_000696_250 Hb_001252_050--Hb_006711_040 Hb_000417_140 Hb_000417_140 Hb_001252_050--Hb_000417_140 Hb_008143_060 Hb_008143_060 Hb_001252_050--Hb_008143_060 Hb_006711_040--Hb_000490_040 Hb_006711_040--Hb_008143_060 Hb_001832_140 Hb_001832_140 Hb_006711_040--Hb_001832_140 Hb_006711_040--Hb_000272_010 Hb_002081_190--Hb_000128_050 Hb_173764_010 Hb_173764_010 Hb_002081_190--Hb_173764_010 Hb_001366_380 Hb_001366_380 Hb_002081_190--Hb_001366_380 Hb_002498_290 Hb_002498_290 Hb_002081_190--Hb_002498_290 Hb_002081_190--Hb_000272_010 Hb_009535_010 Hb_009535_010 Hb_000490_040--Hb_009535_010 Hb_002276_250 Hb_002276_250 Hb_000490_040--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_000490_040--Hb_004357_030 Hb_000535_040 Hb_000535_040 Hb_000490_040--Hb_000535_040 Hb_000272_010--Hb_001366_380 Hb_000260_670 Hb_000260_670 Hb_000272_010--Hb_000260_670 Hb_080147_070 Hb_080147_070 Hb_000272_010--Hb_080147_070 Hb_000272_010--Hb_000535_040 Hb_000128_050--Hb_173764_010 Hb_000552_030 Hb_000552_030 Hb_000128_050--Hb_000552_030 Hb_010053_010 Hb_010053_010 Hb_000128_050--Hb_010053_010 Hb_000128_050--Hb_001366_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0250872 0.691428 0.487509 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.489951 0.0913976

CAGE analysis