Hb_004357_030

Information

Type -
Description -
Location Contig4357: 27583-32796
Sequence    

Annotation

kegg
ID rcu:RCOM_1186280
description transferase, transferring glycosyl groups, putative (EC:2.4.1.12)
nr
ID XP_002527445.1
description transferase, transferring glycosyl groups, putative [Ricinus communis]
swissprot
ID Q9FNI7
description Glucomannan 4-beta-mannosyltransferase 2 OS=Arabidopsis thaliana GN=CSLA2 PE=2 SV=1
trembl
ID B9SN76
description Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_1186280 PE=4 SV=1
Gene Ontology
ID GO:0016760
description glucomannan 4-beta-mannosyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42444: 27628-32794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004357_030 0.0 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
2 Hb_000805_270 0.0721533647 - - PREDICTED: expansin-A4 [Gossypium raimondii]
3 Hb_000339_050 0.0842323118 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
4 Hb_003754_020 0.1032705855 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000506_050 0.1083283441 - - PREDICTED: thymidine kinase [Jatropha curcas]
6 Hb_000490_040 0.1212387791 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
7 Hb_002276_250 0.1221383322 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
8 Hb_027556_060 0.1312657207 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
9 Hb_002601_040 0.132376293 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
10 Hb_004984_020 0.134914346 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
11 Hb_002097_180 0.1396526988 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
12 Hb_003189_010 0.1419261131 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
13 Hb_004055_090 0.1440158995 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
14 Hb_110631_010 0.1470333648 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
15 Hb_000152_590 0.1482203963 - - PREDICTED: 21 kDa protein [Jatropha curcas]
16 Hb_010672_010 0.148712036 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
17 Hb_002304_100 0.1512095875 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
18 Hb_002818_170 0.1513464321 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
19 Hb_000157_020 0.1521758615 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000243_340 0.1536588769 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]

Gene co-expression network

sample Hb_004357_030 Hb_004357_030 Hb_000805_270 Hb_000805_270 Hb_004357_030--Hb_000805_270 Hb_000339_050 Hb_000339_050 Hb_004357_030--Hb_000339_050 Hb_003754_020 Hb_003754_020 Hb_004357_030--Hb_003754_020 Hb_000506_050 Hb_000506_050 Hb_004357_030--Hb_000506_050 Hb_000490_040 Hb_000490_040 Hb_004357_030--Hb_000490_040 Hb_002276_250 Hb_002276_250 Hb_004357_030--Hb_002276_250 Hb_000805_270--Hb_000339_050 Hb_000805_270--Hb_000506_050 Hb_002304_100 Hb_002304_100 Hb_000805_270--Hb_002304_100 Hb_002601_040 Hb_002601_040 Hb_000805_270--Hb_002601_040 Hb_000243_340 Hb_000243_340 Hb_000805_270--Hb_000243_340 Hb_000339_050--Hb_000506_050 Hb_000339_050--Hb_002304_100 Hb_000339_050--Hb_002601_040 Hb_000157_020 Hb_000157_020 Hb_000339_050--Hb_000157_020 Hb_004330_040 Hb_004330_040 Hb_003754_020--Hb_004330_040 Hb_001473_060 Hb_001473_060 Hb_003754_020--Hb_001473_060 Hb_032260_060 Hb_032260_060 Hb_003754_020--Hb_032260_060 Hb_004055_090 Hb_004055_090 Hb_003754_020--Hb_004055_090 Hb_003754_020--Hb_002276_250 Hb_000506_050--Hb_000157_020 Hb_165110_010 Hb_165110_010 Hb_000506_050--Hb_165110_010 Hb_000062_280 Hb_000062_280 Hb_000506_050--Hb_000062_280 Hb_006711_040 Hb_006711_040 Hb_000490_040--Hb_006711_040 Hb_000343_220 Hb_000343_220 Hb_000490_040--Hb_000343_220 Hb_009535_010 Hb_009535_010 Hb_000490_040--Hb_009535_010 Hb_000490_040--Hb_002276_250 Hb_000535_040 Hb_000535_040 Hb_000490_040--Hb_000535_040 Hb_000431_100 Hb_000431_100 Hb_002276_250--Hb_000431_100 Hb_002276_250--Hb_004055_090 Hb_002276_250--Hb_000805_270 Hb_000046_240 Hb_000046_240 Hb_002276_250--Hb_000046_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0394802 0.528881 8.66219 16.9434 0.0083806 0.014639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.49236 1.4282

CAGE analysis