Hb_000506_050

Information

Type -
Description -
Location Contig506: 99546-101234
Sequence    

Annotation

kegg
ID rcu:RCOM_1120040
description thymidine kinase, putative (EC:2.7.1.21)
nr
ID XP_012081418.1
description PREDICTED: thymidine kinase [Jatropha curcas]
swissprot
ID O81263
description Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2
trembl
ID A0A067KDG4
description Thymidine kinase OS=Jatropha curcas GN=JCGZ_18463 PE=3 SV=1
Gene Ontology
ID GO:0004797
description thymidine kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46108: 99556-101303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000506_050 0.0 - - PREDICTED: thymidine kinase [Jatropha curcas]
2 Hb_000157_020 0.0907730892 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000339_050 0.0920949518 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
4 Hb_165110_010 0.0938718522 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
5 Hb_000805_270 0.0955767958 - - PREDICTED: expansin-A4 [Gossypium raimondii]
6 Hb_000062_280 0.103370111 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
7 Hb_004357_030 0.1083283441 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_110631_010 0.1105950134 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
9 Hb_000086_510 0.1114378411 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
10 Hb_000853_250 0.1117930951 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
11 Hb_085829_010 0.1139185819 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
12 Hb_001052_020 0.1152925504 - - hypothetical protein JCGZ_26487 [Jatropha curcas]
13 Hb_004055_090 0.1217049117 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
14 Hb_000320_240 0.1279910782 - - multicopper oxidase, putative [Ricinus communis]
15 Hb_001141_440 0.1319104731 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
16 Hb_001616_100 0.1342679432 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
17 Hb_002601_040 0.1357898932 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
18 Hb_000017_250 0.1369035742 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
19 Hb_135121_010 0.1374107546 - - PREDICTED: uncharacterized protein LOC105635544 [Jatropha curcas]
20 Hb_000243_340 0.1378805187 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]

Gene co-expression network

sample Hb_000506_050 Hb_000506_050 Hb_000157_020 Hb_000157_020 Hb_000506_050--Hb_000157_020 Hb_000339_050 Hb_000339_050 Hb_000506_050--Hb_000339_050 Hb_165110_010 Hb_165110_010 Hb_000506_050--Hb_165110_010 Hb_000805_270 Hb_000805_270 Hb_000506_050--Hb_000805_270 Hb_000062_280 Hb_000062_280 Hb_000506_050--Hb_000062_280 Hb_004357_030 Hb_004357_030 Hb_000506_050--Hb_004357_030 Hb_000890_120 Hb_000890_120 Hb_000157_020--Hb_000890_120 Hb_000157_020--Hb_000339_050 Hb_000086_510 Hb_000086_510 Hb_000157_020--Hb_000086_510 Hb_000157_020--Hb_165110_010 Hb_085829_010 Hb_085829_010 Hb_000157_020--Hb_085829_010 Hb_000339_050--Hb_000805_270 Hb_000339_050--Hb_004357_030 Hb_002304_100 Hb_002304_100 Hb_000339_050--Hb_002304_100 Hb_002601_040 Hb_002601_040 Hb_000339_050--Hb_002601_040 Hb_001052_020 Hb_001052_020 Hb_165110_010--Hb_001052_020 Hb_165110_010--Hb_000062_280 Hb_165110_010--Hb_000086_510 Hb_000320_240 Hb_000320_240 Hb_165110_010--Hb_000320_240 Hb_000805_270--Hb_004357_030 Hb_000805_270--Hb_002304_100 Hb_000805_270--Hb_002601_040 Hb_000243_340 Hb_000243_340 Hb_000805_270--Hb_000243_340 Hb_000062_280--Hb_001052_020 Hb_000853_250 Hb_000853_250 Hb_000062_280--Hb_000853_250 Hb_001141_440 Hb_001141_440 Hb_000062_280--Hb_001141_440 Hb_000962_060 Hb_000962_060 Hb_000062_280--Hb_000962_060 Hb_003754_020 Hb_003754_020 Hb_004357_030--Hb_003754_020 Hb_000490_040 Hb_000490_040 Hb_004357_030--Hb_000490_040 Hb_002276_250 Hb_002276_250 Hb_004357_030--Hb_002276_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120653 0.63236 14.5253 35.1595 0 0.0236307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.061471 0.145017 0 8.21804 2.34456

CAGE analysis