Hb_000890_120

Information

Type -
Description -
Location Contig890: 123265-126836
Sequence    

Annotation

kegg
ID rcu:RCOM_0680330
description serine/threonine protein kinase, putative
nr
ID XP_012069380.1
description PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
swissprot
ID Q7T6X2
description Putative serine/threonine-protein kinase/receptor R826 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R826 PE=3 SV=2
trembl
ID A0A067KUV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02004 PE=4 SV=1
Gene Ontology
ID GO:0004674
description kinase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61603: 123329-124854 , PASA_asmbl_61604: 125096-125206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_120 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
2 Hb_000157_020 0.0963329853 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000086_510 0.1179683091 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
4 Hb_085829_010 0.119863077 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
5 Hb_002900_180 0.1252970125 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
6 Hb_000017_250 0.1383773413 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
7 Hb_004705_060 0.139611364 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
8 Hb_000563_140 0.1411037266 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_004112_080 0.1482113603 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
10 Hb_000506_050 0.149027865 - - PREDICTED: thymidine kinase [Jatropha curcas]
11 Hb_165110_010 0.1497164885 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
12 Hb_000334_090 0.1538296417 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
13 Hb_000320_240 0.1569763488 - - multicopper oxidase, putative [Ricinus communis]
14 Hb_005916_040 0.1572325417 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
15 Hb_002304_110 0.1578561126 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
16 Hb_001616_100 0.1581432148 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
17 Hb_000139_460 0.1625873729 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
18 Hb_001091_060 0.1642905887 - - hypothetical protein JCGZ_27062 [Jatropha curcas]
19 Hb_002228_120 0.164644474 - - potassium channel beta, putative [Ricinus communis]
20 Hb_019299_020 0.1650878184 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]

Gene co-expression network

sample Hb_000890_120 Hb_000890_120 Hb_000157_020 Hb_000157_020 Hb_000890_120--Hb_000157_020 Hb_000086_510 Hb_000086_510 Hb_000890_120--Hb_000086_510 Hb_085829_010 Hb_085829_010 Hb_000890_120--Hb_085829_010 Hb_002900_180 Hb_002900_180 Hb_000890_120--Hb_002900_180 Hb_000017_250 Hb_000017_250 Hb_000890_120--Hb_000017_250 Hb_004705_060 Hb_004705_060 Hb_000890_120--Hb_004705_060 Hb_000506_050 Hb_000506_050 Hb_000157_020--Hb_000506_050 Hb_000339_050 Hb_000339_050 Hb_000157_020--Hb_000339_050 Hb_000157_020--Hb_000086_510 Hb_165110_010 Hb_165110_010 Hb_000157_020--Hb_165110_010 Hb_000157_020--Hb_085829_010 Hb_000086_510--Hb_085829_010 Hb_000334_090 Hb_000334_090 Hb_000086_510--Hb_000334_090 Hb_000086_510--Hb_165110_010 Hb_000320_240 Hb_000320_240 Hb_000086_510--Hb_000320_240 Hb_000243_340 Hb_000243_340 Hb_000086_510--Hb_000243_340 Hb_085829_010--Hb_004705_060 Hb_085829_010--Hb_000334_090 Hb_085829_010--Hb_000017_250 Hb_001213_060 Hb_001213_060 Hb_085829_010--Hb_001213_060 Hb_000853_250 Hb_000853_250 Hb_085829_010--Hb_000853_250 Hb_000462_070 Hb_000462_070 Hb_002900_180--Hb_000462_070 Hb_000003_110 Hb_000003_110 Hb_002900_180--Hb_000003_110 Hb_000260_110 Hb_000260_110 Hb_002900_180--Hb_000260_110 Hb_002900_180--Hb_000017_250 Hb_000540_160 Hb_000540_160 Hb_002900_180--Hb_000540_160 Hb_002701_030 Hb_002701_030 Hb_000017_250--Hb_002701_030 Hb_000017_250--Hb_004705_060 Hb_000017_250--Hb_000853_250 Hb_000162_190 Hb_000162_190 Hb_000017_250--Hb_000162_190 Hb_025787_020 Hb_025787_020 Hb_000017_250--Hb_025787_020 Hb_009367_070 Hb_009367_070 Hb_004705_060--Hb_009367_070 Hb_000333_140 Hb_000333_140 Hb_004705_060--Hb_000333_140 Hb_004112_080 Hb_004112_080 Hb_004705_060--Hb_004112_080 Hb_000207_060 Hb_000207_060 Hb_004705_060--Hb_000207_060 Hb_034713_010 Hb_034713_010 Hb_004705_060--Hb_034713_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0158418 0.244631 1.88737 6.54019 0.0593573 0.0162565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0361384 0.142145 0.0531341 0.79583 0.236548

CAGE analysis