Hb_000540_160

Information

Type -
Description -
Location Contig540: 179737-182747
Sequence    

Annotation

kegg
ID rcu:RCOM_0327510
description big map kinase/bmk, putative (EC:2.7.11.24)
nr
ID XP_012064920.1
description PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
swissprot
ID Q40531
description Mitogen-activated protein kinase homolog NTF6 OS=Nicotiana tabacum GN=NTF6 PE=2 SV=1
trembl
ID A0A067LA95
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_05610 PE=3 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase homolog ntf6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47828: 179789-180698 , PASA_asmbl_47829: 180732-181050 , PASA_asmbl_47830: 180964-181402 , PASA_asmbl_47831: 181420-182704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_160 0.0 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
2 Hb_002900_180 0.1394821584 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
3 Hb_003728_110 0.1450488491 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
4 Hb_000028_490 0.1526047849 - - calmodulin-like protein 6a [Populus trichocarpa]
5 Hb_124951_020 0.1600636784 - - -
6 Hb_002490_030 0.161699536 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004147_070 0.1624501081 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
8 Hb_002292_080 0.1650686239 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_031284_030 0.1652488264 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008725_070 0.16587489 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
11 Hb_000093_090 0.1659019102 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
12 Hb_012395_050 0.1663760651 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
13 Hb_000023_110 0.1676515291 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
14 Hb_103942_030 0.1715932574 - - protein with unknown function [Ricinus communis]
15 Hb_030685_010 0.1730488055 - - -
16 Hb_001780_030 0.1780593256 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
17 Hb_010883_180 0.1800690553 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
18 Hb_000049_270 0.1805461116 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
19 Hb_001366_170 0.181916559 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
20 Hb_001902_200 0.1820900298 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]

Gene co-expression network

sample Hb_000540_160 Hb_000540_160 Hb_002900_180 Hb_002900_180 Hb_000540_160--Hb_002900_180 Hb_003728_110 Hb_003728_110 Hb_000540_160--Hb_003728_110 Hb_000028_490 Hb_000028_490 Hb_000540_160--Hb_000028_490 Hb_124951_020 Hb_124951_020 Hb_000540_160--Hb_124951_020 Hb_002490_030 Hb_002490_030 Hb_000540_160--Hb_002490_030 Hb_004147_070 Hb_004147_070 Hb_000540_160--Hb_004147_070 Hb_000462_070 Hb_000462_070 Hb_002900_180--Hb_000462_070 Hb_000003_110 Hb_000003_110 Hb_002900_180--Hb_000003_110 Hb_000260_110 Hb_000260_110 Hb_002900_180--Hb_000260_110 Hb_000890_120 Hb_000890_120 Hb_002900_180--Hb_000890_120 Hb_000017_250 Hb_000017_250 Hb_002900_180--Hb_000017_250 Hb_003992_280 Hb_003992_280 Hb_003728_110--Hb_003992_280 Hb_002292_080 Hb_002292_080 Hb_003728_110--Hb_002292_080 Hb_003606_050 Hb_003606_050 Hb_003728_110--Hb_003606_050 Hb_003935_040 Hb_003935_040 Hb_003728_110--Hb_003935_040 Hb_030685_010 Hb_030685_010 Hb_003728_110--Hb_030685_010 Hb_003055_090 Hb_003055_090 Hb_003728_110--Hb_003055_090 Hb_001780_030 Hb_001780_030 Hb_000028_490--Hb_001780_030 Hb_127416_010 Hb_127416_010 Hb_000028_490--Hb_127416_010 Hb_183086_070 Hb_183086_070 Hb_000028_490--Hb_183086_070 Hb_005333_080 Hb_005333_080 Hb_000028_490--Hb_005333_080 Hb_000032_250 Hb_000032_250 Hb_000028_490--Hb_000032_250 Hb_007044_220 Hb_007044_220 Hb_000028_490--Hb_007044_220 Hb_124951_020--Hb_002490_030 Hb_002965_060 Hb_002965_060 Hb_124951_020--Hb_002965_060 Hb_124951_020--Hb_003728_110 Hb_007163_050 Hb_007163_050 Hb_124951_020--Hb_007163_050 Hb_124951_020--Hb_030685_010 Hb_002272_200 Hb_002272_200 Hb_002490_030--Hb_002272_200 Hb_002900_100 Hb_002900_100 Hb_002490_030--Hb_002900_100 Hb_000816_190 Hb_000816_190 Hb_002490_030--Hb_000816_190 Hb_001366_170 Hb_001366_170 Hb_002490_030--Hb_001366_170 Hb_066514_010 Hb_066514_010 Hb_002490_030--Hb_066514_010 Hb_001902_200 Hb_001902_200 Hb_004147_070--Hb_001902_200 Hb_004147_070--Hb_001366_170 Hb_008725_070 Hb_008725_070 Hb_004147_070--Hb_008725_070 Hb_003408_010 Hb_003408_010 Hb_004147_070--Hb_003408_010 Hb_001401_040 Hb_001401_040 Hb_004147_070--Hb_001401_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.334185 1.02448 6.13634 14.3256 0.297001 0.436696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.121922 0.14388 1.66832 2.0765 1.65697

CAGE analysis