Hb_008725_070

Information

Type -
Description -
Location Contig8725: 31871-37786
Sequence    

Annotation

kegg
ID rcu:RCOM_1180270
description Cellulose synthase A catalytic subunit 3 [UDP-forming], putative (EC:2.4.1.12)
nr
ID XP_002523143.1
description Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
swissprot
ID Q9SRW9
description Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1
trembl
ID B9SAX4
description Cellulose synthase A catalytic subunit 3 [UDP-forming], putative OS=Ricinus communis GN=RCOM_1180270 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cellulose synthase-like protein d5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_070 0.0 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
2 Hb_004147_070 0.1527659933 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
3 Hb_001780_030 0.1563919402 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
4 Hb_006289_020 0.162288441 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
5 Hb_000540_160 0.16587489 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
6 Hb_000028_490 0.1747084531 - - calmodulin-like protein 6a [Populus trichocarpa]
7 Hb_000960_090 0.1786083593 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003728_110 0.1801961072 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
9 Hb_010889_010 0.182520592 - - PREDICTED: myosin-12 [Jatropha curcas]
10 Hb_001322_160 0.1843179361 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
11 Hb_003055_090 0.1844611246 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
12 Hb_002662_040 0.1864984471 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
13 Hb_001401_040 0.1876503011 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
14 Hb_003813_090 0.1941302318 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
15 Hb_002965_160 0.1950944229 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
16 Hb_003992_280 0.1959959929 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
17 Hb_010381_100 0.1983735019 - - Phospholipase D epsilon [Morus notabilis]
18 Hb_006693_010 0.2008973009 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
19 Hb_003408_010 0.2010717308 - - fructokinase [Manihot esculenta]
20 Hb_000567_290 0.2021259073 - - hypothetical protein RCOM_0303940 [Ricinus communis]

Gene co-expression network

sample Hb_008725_070 Hb_008725_070 Hb_004147_070 Hb_004147_070 Hb_008725_070--Hb_004147_070 Hb_001780_030 Hb_001780_030 Hb_008725_070--Hb_001780_030 Hb_006289_020 Hb_006289_020 Hb_008725_070--Hb_006289_020 Hb_000540_160 Hb_000540_160 Hb_008725_070--Hb_000540_160 Hb_000028_490 Hb_000028_490 Hb_008725_070--Hb_000028_490 Hb_000960_090 Hb_000960_090 Hb_008725_070--Hb_000960_090 Hb_001902_200 Hb_001902_200 Hb_004147_070--Hb_001902_200 Hb_001366_170 Hb_001366_170 Hb_004147_070--Hb_001366_170 Hb_004147_070--Hb_000540_160 Hb_003408_010 Hb_003408_010 Hb_004147_070--Hb_003408_010 Hb_001401_040 Hb_001401_040 Hb_004147_070--Hb_001401_040 Hb_001780_030--Hb_000028_490 Hb_000244_150 Hb_000244_150 Hb_001780_030--Hb_000244_150 Hb_000483_080 Hb_000483_080 Hb_001780_030--Hb_000483_080 Hb_001322_160 Hb_001322_160 Hb_001780_030--Hb_001322_160 Hb_000077_110 Hb_000077_110 Hb_001780_030--Hb_000077_110 Hb_002965_160 Hb_002965_160 Hb_006289_020--Hb_002965_160 Hb_003878_060 Hb_003878_060 Hb_006289_020--Hb_003878_060 Hb_000236_480 Hb_000236_480 Hb_006289_020--Hb_000236_480 Hb_006289_020--Hb_000960_090 Hb_000288_090 Hb_000288_090 Hb_006289_020--Hb_000288_090 Hb_002900_180 Hb_002900_180 Hb_000540_160--Hb_002900_180 Hb_003728_110 Hb_003728_110 Hb_000540_160--Hb_003728_110 Hb_000540_160--Hb_000028_490 Hb_124951_020 Hb_124951_020 Hb_000540_160--Hb_124951_020 Hb_002490_030 Hb_002490_030 Hb_000540_160--Hb_002490_030 Hb_127416_010 Hb_127416_010 Hb_000028_490--Hb_127416_010 Hb_183086_070 Hb_183086_070 Hb_000028_490--Hb_183086_070 Hb_005333_080 Hb_005333_080 Hb_000028_490--Hb_005333_080 Hb_000032_250 Hb_000032_250 Hb_000028_490--Hb_000032_250 Hb_007044_220 Hb_007044_220 Hb_000028_490--Hb_007044_220 Hb_000260_650 Hb_000260_650 Hb_000960_090--Hb_000260_650 Hb_000566_130 Hb_000566_130 Hb_000960_090--Hb_000566_130 Hb_000960_090--Hb_000288_090 Hb_000960_090--Hb_000077_110 Hb_006970_130 Hb_006970_130 Hb_000960_090--Hb_006970_130 Hb_093458_020 Hb_093458_020 Hb_000960_090--Hb_093458_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0162391 0.0329535 0.418026 0.465928 0.0108341 0.00496791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0245342 0 0.0925581 0.080338 0.0619555

CAGE analysis