Hb_000960_090

Information

Type -
Description -
Location Contig960: 109455-112835
Sequence    

Annotation

kegg
ID rcu:RCOM_1324410
description hypothetical protein
nr
ID XP_002520009.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1Z0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1324410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63715: 109338-112851 , PASA_asmbl_63716: 109626-110496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000960_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000260_650 0.1114322158 - - PREDICTED: protein PFC0760c [Jatropha curcas]
3 Hb_000566_130 0.138910854 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
4 Hb_000288_090 0.1403270968 - - unnamed protein product [Vitis vinifera]
5 Hb_000077_110 0.1412457422 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
6 Hb_006970_130 0.1421639057 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
7 Hb_093458_020 0.1515250114 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
8 Hb_001322_160 0.1519247771 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
9 Hb_004155_020 0.1532649291 transcription factor TF Family: MYB myb, putative [Ricinus communis]
10 Hb_000003_060 0.1566281896 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
11 Hb_004968_040 0.1618567346 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
12 Hb_001780_030 0.1631513186 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
13 Hb_004774_030 0.1638024627 - - PREDICTED: uncharacterized protein LOC105648177 [Jatropha curcas]
14 Hb_000668_060 0.1645138236 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
15 Hb_010180_030 0.1656296017 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
16 Hb_006289_020 0.1664213786 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
17 Hb_001401_040 0.1672314549 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
18 Hb_003055_090 0.1727812313 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
19 Hb_004920_050 0.1737046449 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
20 Hb_001080_050 0.1738162909 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]

Gene co-expression network

sample Hb_000960_090 Hb_000960_090 Hb_000260_650 Hb_000260_650 Hb_000960_090--Hb_000260_650 Hb_000566_130 Hb_000566_130 Hb_000960_090--Hb_000566_130 Hb_000288_090 Hb_000288_090 Hb_000960_090--Hb_000288_090 Hb_000077_110 Hb_000077_110 Hb_000960_090--Hb_000077_110 Hb_006970_130 Hb_006970_130 Hb_000960_090--Hb_006970_130 Hb_093458_020 Hb_093458_020 Hb_000960_090--Hb_093458_020 Hb_005901_030 Hb_005901_030 Hb_000260_650--Hb_005901_030 Hb_004155_020 Hb_004155_020 Hb_000260_650--Hb_004155_020 Hb_000260_650--Hb_000288_090 Hb_000668_060 Hb_000668_060 Hb_000260_650--Hb_000668_060 Hb_000260_650--Hb_006970_130 Hb_000566_130--Hb_093458_020 Hb_000566_130--Hb_000077_110 Hb_004920_050 Hb_004920_050 Hb_000566_130--Hb_004920_050 Hb_000307_220 Hb_000307_220 Hb_000566_130--Hb_000307_220 Hb_002284_260 Hb_002284_260 Hb_000566_130--Hb_002284_260 Hb_000181_270 Hb_000181_270 Hb_000288_090--Hb_000181_270 Hb_000365_210 Hb_000365_210 Hb_000288_090--Hb_000365_210 Hb_000288_090--Hb_006970_130 Hb_000003_060 Hb_000003_060 Hb_000288_090--Hb_000003_060 Hb_000288_090--Hb_004920_050 Hb_000483_080 Hb_000483_080 Hb_000077_110--Hb_000483_080 Hb_000077_110--Hb_000307_220 Hb_000077_110--Hb_093458_020 Hb_000077_110--Hb_004920_050 Hb_000077_110--Hb_002284_260 Hb_005271_140 Hb_005271_140 Hb_006970_130--Hb_005271_140 Hb_004007_130 Hb_004007_130 Hb_006970_130--Hb_004007_130 Hb_000190_220 Hb_000190_220 Hb_006970_130--Hb_000190_220 Hb_004531_080 Hb_004531_080 Hb_006970_130--Hb_004531_080 Hb_004968_040 Hb_004968_040 Hb_006970_130--Hb_004968_040 Hb_093458_020--Hb_002284_260 Hb_002871_130 Hb_002871_130 Hb_093458_020--Hb_002871_130 Hb_093458_020--Hb_000003_060 Hb_093458_020--Hb_004968_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.954872 0.676615 11.5688 9.12229 0.682589 0.490244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.690567 0.780264 1.30149 2.76652 0.947695

CAGE analysis