Hb_000307_220

Information

Type -
Description -
Location Contig307: 224031-228033
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26660g
description POPTRDRAFT_801579; oxidoreductase family protein
nr
ID XP_002307750.2
description oxidoreductase family protein [Populus trichocarpa]
swissprot
ID Q9LN20
description Probable prolyl 4-hydroxylase 3 OS=Arabidopsis thaliana GN=P4H3 PE=2 SV=1
trembl
ID B9H5B9
description Oxidoreductase family protein OS=Populus trichocarpa GN=POPTR_0005s26660g PE=4 SV=2
Gene Ontology
ID GO:0005739
description probable prolyl 4-hydroxylase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32435: 226878-227965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_220 0.0 - - oxidoreductase family protein [Populus trichocarpa]
2 Hb_000077_110 0.1063632235 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
3 Hb_000237_020 0.1142700308 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
4 Hb_000566_130 0.1370982985 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
5 Hb_172706_020 0.1420920841 - - PREDICTED: protein ABIL2 [Jatropha curcas]
6 Hb_000581_030 0.1453506782 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002518_090 0.1477222899 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
8 Hb_000934_150 0.1500688741 - - hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
9 Hb_000940_210 0.1531682287 - - cyclophilin [Hevea brasiliensis]
10 Hb_003540_120 0.1548079639 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_004920_050 0.154905514 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
12 Hb_005694_180 0.1550947241 - - PREDICTED: cytochrome b5 [Jatropha curcas]
13 Hb_093458_020 0.1567468599 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
14 Hb_127416_010 0.1572782319 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
15 Hb_012760_090 0.1594078599 - - Aspartic proteinase-like protein 1 [Morus notabilis]
16 Hb_005333_080 0.1594885798 - - conserved hypothetical protein [Ricinus communis]
17 Hb_023226_030 0.1603896134 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
18 Hb_028872_160 0.1614430571 - - PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]
19 Hb_000803_120 0.1618378297 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
20 Hb_001080_050 0.1624119563 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]

Gene co-expression network

sample Hb_000307_220 Hb_000307_220 Hb_000077_110 Hb_000077_110 Hb_000307_220--Hb_000077_110 Hb_000237_020 Hb_000237_020 Hb_000307_220--Hb_000237_020 Hb_000566_130 Hb_000566_130 Hb_000307_220--Hb_000566_130 Hb_172706_020 Hb_172706_020 Hb_000307_220--Hb_172706_020 Hb_000581_030 Hb_000581_030 Hb_000307_220--Hb_000581_030 Hb_002518_090 Hb_002518_090 Hb_000307_220--Hb_002518_090 Hb_000483_080 Hb_000483_080 Hb_000077_110--Hb_000483_080 Hb_000077_110--Hb_000566_130 Hb_093458_020 Hb_093458_020 Hb_000077_110--Hb_093458_020 Hb_004920_050 Hb_004920_050 Hb_000077_110--Hb_004920_050 Hb_002284_260 Hb_002284_260 Hb_000077_110--Hb_002284_260 Hb_000237_020--Hb_000581_030 Hb_000917_240 Hb_000917_240 Hb_000237_020--Hb_000917_240 Hb_003430_080 Hb_003430_080 Hb_000237_020--Hb_003430_080 Hb_000940_210 Hb_000940_210 Hb_000237_020--Hb_000940_210 Hb_019654_060 Hb_019654_060 Hb_000237_020--Hb_019654_060 Hb_000566_130--Hb_093458_020 Hb_000566_130--Hb_004920_050 Hb_000960_090 Hb_000960_090 Hb_000566_130--Hb_000960_090 Hb_000566_130--Hb_002284_260 Hb_172706_020--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_172706_020--Hb_023226_030 Hb_172706_020--Hb_002518_090 Hb_034507_060 Hb_034507_060 Hb_172706_020--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_172706_020--Hb_004218_130 Hb_000309_030 Hb_000309_030 Hb_172706_020--Hb_000309_030 Hb_000003_030 Hb_000003_030 Hb_000581_030--Hb_000003_030 Hb_000581_030--Hb_019654_060 Hb_000581_030--Hb_000940_210 Hb_004032_210 Hb_004032_210 Hb_000581_030--Hb_004032_210 Hb_003740_020 Hb_003740_020 Hb_000581_030--Hb_003740_020 Hb_002518_090--Hb_000940_210 Hb_002518_090--Hb_023226_030 Hb_000220_110 Hb_000220_110 Hb_002518_090--Hb_000220_110 Hb_004883_020 Hb_004883_020 Hb_002518_090--Hb_004883_020 Hb_002518_090--Hb_000309_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.445104 2.3036 11.1799 11.0935 1.14334 1.07298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.608291 1.20898 0.614662 6.53684 2.10578

CAGE analysis