Hb_000483_080

Information

Type -
Description -
Location Contig483: 56617-66737
Sequence    

Annotation

kegg
ID rcu:RCOM_0100760
description Structural maintenance of chromosome, putative
nr
ID KDO72571.1
description hypothetical protein CISIN_1g000833mg [Citrus sinensis]
swissprot
ID Q9FJL0
description Structural maintenance of chromosomes protein 4 OS=Arabidopsis thaliana GN=SMC4 PE=1 SV=1
trembl
ID A0A067GB06
description Structural maintenance of chromosomes protein OS=Citrus sinensis GN=CISIN_1g000833mg PE=3 SV=1
Gene Ontology
ID GO:0000775
description structural maintenance of chromosomes protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44802: 56404-61562 , PASA_asmbl_44803: 61566-66757 , PASA_asmbl_44804: 67721-68854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_080 0.0 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
2 Hb_001123_310 0.0884009046 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
3 Hb_000120_300 0.0984040678 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
4 Hb_000077_110 0.1057376142 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
5 Hb_004531_080 0.1219707087 - - hypothetical protein RCOM_1491960 [Ricinus communis]
6 Hb_002871_130 0.1224977588 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
7 Hb_002284_260 0.1336812572 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
8 Hb_007943_180 0.1350671258 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
9 Hb_000200_330 0.1376752592 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
10 Hb_004007_130 0.138463523 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
11 Hb_002965_160 0.1389117847 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
12 Hb_005144_060 0.141661081 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
13 Hb_001476_130 0.1442136195 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
14 Hb_004586_040 0.1442786711 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
15 Hb_093458_020 0.1463931803 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
16 Hb_022693_110 0.1491409969 - - phosphate transporter [Manihot esculenta]
17 Hb_000207_350 0.1510422208 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
18 Hb_001780_030 0.1546384574 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
19 Hb_011174_040 0.1552133095 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001524_120 0.1572266905 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000483_080 Hb_000483_080 Hb_001123_310 Hb_001123_310 Hb_000483_080--Hb_001123_310 Hb_000120_300 Hb_000120_300 Hb_000483_080--Hb_000120_300 Hb_000077_110 Hb_000077_110 Hb_000483_080--Hb_000077_110 Hb_004531_080 Hb_004531_080 Hb_000483_080--Hb_004531_080 Hb_002871_130 Hb_002871_130 Hb_000483_080--Hb_002871_130 Hb_002284_260 Hb_002284_260 Hb_000483_080--Hb_002284_260 Hb_001123_310--Hb_000120_300 Hb_000207_350 Hb_000207_350 Hb_001123_310--Hb_000207_350 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_010381_040 Hb_010381_040 Hb_001123_310--Hb_010381_040 Hb_006133_020 Hb_006133_020 Hb_001123_310--Hb_006133_020 Hb_021346_050 Hb_021346_050 Hb_000120_300--Hb_021346_050 Hb_000120_300--Hb_000207_350 Hb_000088_240 Hb_000088_240 Hb_000120_300--Hb_000088_240 Hb_010868_040 Hb_010868_040 Hb_000120_300--Hb_010868_040 Hb_000307_220 Hb_000307_220 Hb_000077_110--Hb_000307_220 Hb_000566_130 Hb_000566_130 Hb_000077_110--Hb_000566_130 Hb_093458_020 Hb_093458_020 Hb_000077_110--Hb_093458_020 Hb_004920_050 Hb_004920_050 Hb_000077_110--Hb_004920_050 Hb_000077_110--Hb_002284_260 Hb_004531_080--Hb_002871_130 Hb_007943_180 Hb_007943_180 Hb_004531_080--Hb_007943_180 Hb_000500_340 Hb_000500_340 Hb_004531_080--Hb_000500_340 Hb_004007_130 Hb_004007_130 Hb_004531_080--Hb_004007_130 Hb_004531_080--Hb_001123_310 Hb_002871_130--Hb_004007_130 Hb_011861_040 Hb_011861_040 Hb_002871_130--Hb_011861_040 Hb_002871_130--Hb_002284_260 Hb_002871_130--Hb_093458_020 Hb_002284_260--Hb_093458_020 Hb_124677_050 Hb_124677_050 Hb_002284_260--Hb_124677_050 Hb_002284_260--Hb_004007_130 Hb_003360_010 Hb_003360_010 Hb_002284_260--Hb_003360_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193812 0.449646 6.79173 4.62797 0.446757 0.324262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.242858 0.191121 0.183491 2.06466 2.06592

CAGE analysis