Hb_000500_340

Information

Type -
Description -
Location Contig500: 249736-255697
Sequence    

Annotation

kegg
ID pmum:103325046
description exonuclease 1
nr
ID XP_012091867.1
description PREDICTED: exonuclease 1 [Jatropha curcas]
swissprot
ID Q8L6Z7
description Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2
trembl
ID A0A067JNV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21645 PE=4 SV=1
Gene Ontology
ID GO:0004518
description 5 -3 exonuclease family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45771: 249687-250026 , PASA_asmbl_45772: 252066-252693 , PASA_asmbl_45774: 254789-255480 , PASA_asmbl_45775: 255499-256254 , PASA_asmbl_45776: 255520-256204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_340 0.0 - - PREDICTED: exonuclease 1 [Jatropha curcas]
2 Hb_124677_050 0.11492303 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004531_080 0.115242434 - - hypothetical protein RCOM_1491960 [Ricinus communis]
4 Hb_007632_210 0.1175219202 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
5 Hb_003228_050 0.1187893907 - - chromomethylase [Hevea brasiliensis]
6 Hb_001584_360 0.1322063867 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
7 Hb_005183_150 0.1324333917 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
8 Hb_001780_080 0.1393460577 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
9 Hb_000956_050 0.1439182826 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
10 Hb_000172_090 0.1444110348 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
11 Hb_010180_030 0.1479186569 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
12 Hb_002030_130 0.1482495107 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
13 Hb_003109_010 0.1484651473 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
14 Hb_003784_040 0.1500311427 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
15 Hb_000190_220 0.1504582156 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
16 Hb_001524_120 0.1531131577 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
17 Hb_001478_020 0.1535825035 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
18 Hb_001501_070 0.1559451281 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
19 Hb_033041_010 0.1566985429 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
20 Hb_002311_090 0.1572174971 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]

Gene co-expression network

sample Hb_000500_340 Hb_000500_340 Hb_124677_050 Hb_124677_050 Hb_000500_340--Hb_124677_050 Hb_004531_080 Hb_004531_080 Hb_000500_340--Hb_004531_080 Hb_007632_210 Hb_007632_210 Hb_000500_340--Hb_007632_210 Hb_003228_050 Hb_003228_050 Hb_000500_340--Hb_003228_050 Hb_001584_360 Hb_001584_360 Hb_000500_340--Hb_001584_360 Hb_005183_150 Hb_005183_150 Hb_000500_340--Hb_005183_150 Hb_003360_010 Hb_003360_010 Hb_124677_050--Hb_003360_010 Hb_124677_050--Hb_007632_210 Hb_124677_050--Hb_005183_150 Hb_002284_260 Hb_002284_260 Hb_124677_050--Hb_002284_260 Hb_002311_090 Hb_002311_090 Hb_124677_050--Hb_002311_090 Hb_124677_050--Hb_003228_050 Hb_002871_130 Hb_002871_130 Hb_004531_080--Hb_002871_130 Hb_007943_180 Hb_007943_180 Hb_004531_080--Hb_007943_180 Hb_004007_130 Hb_004007_130 Hb_004531_080--Hb_004007_130 Hb_001123_310 Hb_001123_310 Hb_004531_080--Hb_001123_310 Hb_000483_080 Hb_000483_080 Hb_004531_080--Hb_000483_080 Hb_007632_210--Hb_005183_150 Hb_000661_150 Hb_000661_150 Hb_007632_210--Hb_000661_150 Hb_007632_210--Hb_002311_090 Hb_007632_210--Hb_003228_050 Hb_101133_050 Hb_101133_050 Hb_007632_210--Hb_101133_050 Hb_002030_130 Hb_002030_130 Hb_003228_050--Hb_002030_130 Hb_001524_120 Hb_001524_120 Hb_003228_050--Hb_001524_120 Hb_003228_050--Hb_101133_050 Hb_000956_050 Hb_000956_050 Hb_003228_050--Hb_000956_050 Hb_000334_120 Hb_000334_120 Hb_001584_360--Hb_000334_120 Hb_001688_100 Hb_001688_100 Hb_001584_360--Hb_001688_100 Hb_033041_010 Hb_033041_010 Hb_001584_360--Hb_033041_010 Hb_001584_360--Hb_005183_150 Hb_007632_080 Hb_007632_080 Hb_001584_360--Hb_007632_080 Hb_001584_360--Hb_101133_050 Hb_005183_150--Hb_033041_010 Hb_005183_150--Hb_003360_010 Hb_005183_150--Hb_001524_120 Hb_005183_150--Hb_007632_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0171315 0.11163 3.12556 1.5632 0 0.0231023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0972526 0.229574 0.174725 0.559523 0.454496

CAGE analysis